Strain Fitness in Agrobacterium fabrum C58 around Atu2729

Experiment: R2A with nitrite 9 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 9 mM
2,717,785	+		Atu2728	0.81	-0.8
2,717,830	+		Atu2728	0.83	-1.1
2,717,865	+		Atu2728	0.85	-0.7
2,717,921	-		Atu2728	0.89	-0.4
2,717,931	-		Atu2728	0.89	-0.5
2,718,089	-				+0.0
2,718,102	+				-0.2
2,718,108	+				-0.2
2,718,108	+				-1.2
2,718,125	-				+1.0
2,718,132	-				+0.1
2,718,399	-		Atu2729	0.63	+0.2
2,718,457	+		Atu2729	0.83	-0.0
2,718,457	-		Atu2729	0.83	+1.0
2,718,518	-				-0.3
2,718,571	+				+0.6
2,718,643	+				-1.0
2,718,810	+				-0.6
2,718,849	+				+0.5
2,718,849	-				+0.1
2,718,855	-				-0.3
2,718,857	-				+0.3
2,718,916	-				-0.6
2,718,954	+				-0.3
2,718,962	-				+0.3
2,719,005	+				+0.1
2,719,005	+				-0.8
2,719,042	+				-0.3
2,719,050	-				+0.2
2,719,066	-				-0.1
2,719,066	-				-0.3
2,719,150	+				-0.3
2,719,202	+				+0.3
2,719,210	-				-0.1
2,719,220	-				-0.1
2,719,285	+				-0.3
2,719,285	+				+0.6
2,719,331	+				+0.3
2,719,331	+				+0.3
2,719,477	+				-0.6