Experiment: R2A with nitrite 9 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0610 and Atu0611 are separated by 11 nucleotides Atu0611 and Atu0612 are separated by 4 nucleotides
Atu0610: Atu0610 - ABC transporter, nucleotide binding/ATPase protein, at 597,569 to 598,726
Atu0610
Atu0611: Atu0611 - ABC transporter, membrane spanning protein, at 598,738 to 599,646
Atu0611
Atu0612: Atu0612 - ABC transporter, membrane spanning protein, at 599,651 to 600,463
Atu0612
Position (kb) 598
599
600 Strain fitness (log2 ratio) -1
0
1 at 597.788 kb on - strand, within Atu0610 at 597.809 kb on - strand, within Atu0610 at 597.868 kb on - strand, within Atu0610 at 597.939 kb on + strand, within Atu0610 at 597.957 kb on - strand, within Atu0610 at 597.972 kb on + strand, within Atu0610 at 598.001 kb on + strand, within Atu0610 at 598.081 kb on + strand, within Atu0610 at 598.081 kb on + strand, within Atu0610 at 598.122 kb on + strand, within Atu0610 at 598.130 kb on - strand, within Atu0610 at 598.208 kb on - strand, within Atu0610 at 598.244 kb on + strand, within Atu0610 at 598.249 kb on + strand, within Atu0610 at 598.396 kb on + strand, within Atu0610 at 598.405 kb on + strand, within Atu0610 at 598.408 kb on + strand, within Atu0610 at 598.468 kb on + strand, within Atu0610 at 598.476 kb on - strand, within Atu0610 at 598.638 kb on - strand at 598.733 kb on - strand at 598.769 kb on + strand at 599.067 kb on - strand, within Atu0611 at 599.207 kb on + strand, within Atu0611 at 599.208 kb on + strand, within Atu0611 at 599.225 kb on - strand, within Atu0611 at 599.243 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.354 kb on - strand, within Atu0611 at 599.477 kb on + strand, within Atu0611 at 599.563 kb on - strand at 599.601 kb on - strand at 599.637 kb on + strand at 599.645 kb on - strand at 599.645 kb on - strand at 599.656 kb on - strand at 599.723 kb on - strand at 599.745 kb on + strand, within Atu0612 at 599.761 kb on + strand, within Atu0612 at 599.821 kb on - strand, within Atu0612 at 599.899 kb on + strand, within Atu0612 at 599.946 kb on - strand, within Atu0612 at 599.960 kb on - strand, within Atu0612 at 599.973 kb on - strand, within Atu0612 at 600.062 kb on + strand, within Atu0612 at 600.123 kb on + strand, within Atu0612 at 600.127 kb on + strand, within Atu0612 at 600.316 kb on + strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.367 kb on - strand, within Atu0612 at 600.405 kb on + strand at 600.427 kb on - strand at 600.471 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with nitrite 9 mM remove 597,788 - Atu0610 0.19 -0.1 597,809 - Atu0610 0.21 +0.5 597,868 - Atu0610 0.26 -0.6 597,939 + Atu0610 0.32 -0.2 597,957 - Atu0610 0.34 -1.1 597,972 + Atu0610 0.35 +0.1 598,001 + Atu0610 0.37 +0.5 598,081 + Atu0610 0.44 -0.2 598,081 + Atu0610 0.44 -0.1 598,122 + Atu0610 0.48 -1.1 598,130 - Atu0610 0.48 +0.9 598,208 - Atu0610 0.55 -0.4 598,244 + Atu0610 0.58 +1.5 598,249 + Atu0610 0.59 -0.3 598,396 + Atu0610 0.71 +0.0 598,405 + Atu0610 0.72 -0.3 598,408 + Atu0610 0.72 +0.5 598,468 + Atu0610 0.78 +0.1 598,476 - Atu0610 0.78 +0.4 598,638 - -0.9 598,733 - +0.5 598,769 + +0.1 599,067 - Atu0611 0.36 -0.6 599,207 + Atu0611 0.52 -0.0 599,208 + Atu0611 0.52 +0.3 599,225 - Atu0611 0.54 +0.8 599,243 - Atu0611 0.56 +0.2 599,354 - Atu0611 0.68 -0.3 599,354 - Atu0611 0.68 -0.1 599,354 - Atu0611 0.68 -0.0 599,477 + Atu0611 0.81 -0.4 599,563 - -0.5 599,601 - -0.2 599,637 + -0.5 599,645 - +0.0 599,645 - -0.7 599,656 - -0.1 599,723 - -0.3 599,745 + Atu0612 0.12 +0.2 599,761 + Atu0612 0.14 -0.0 599,821 - Atu0612 0.21 +0.0 599,899 + Atu0612 0.31 +1.5 599,946 - Atu0612 0.36 -0.0 599,960 - Atu0612 0.38 -0.9 599,973 - Atu0612 0.40 +0.6 600,062 + Atu0612 0.51 -0.2 600,123 + Atu0612 0.58 +0.3 600,127 + Atu0612 0.59 +1.5 600,316 + Atu0612 0.82 -0.8 600,367 - Atu0612 0.88 +0.1 600,367 - Atu0612 0.88 +0.9 600,367 - Atu0612 0.88 +0.0 600,405 + -0.3 600,427 - -0.2 600,471 - -0.2
Or see this region's nucleotide sequence