Experiment: R2A with tungstate 375 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3389 and Atu3390 overlap by 4 nucleotides Atu3390 and Atu3391 are separated by 96 nucleotides
Atu3389: Atu3389 - iron ABC transporter permease, at 433,128 to 434,195
Atu3389
Atu3390: Atu3390 - ABC transporter substrate-binding protein, at 434,192 to 435,331
Atu3390
Atu3391: Atu3391 - ABC transporter substrate-binding protein, at 435,428 to 436,561
Atu3391
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 433.471 kb on + strand, within Atu3389 at 433.494 kb on + strand, within Atu3389 at 433.502 kb on - strand, within Atu3389 at 433.542 kb on + strand, within Atu3389 at 433.544 kb on + strand, within Atu3389 at 433.550 kb on - strand, within Atu3389 at 433.550 kb on - strand, within Atu3389 at 433.550 kb on - strand, within Atu3389 at 433.578 kb on + strand, within Atu3389 at 433.777 kb on + strand, within Atu3389 at 433.862 kb on + strand, within Atu3389 at 433.897 kb on + strand, within Atu3389 at 433.905 kb on - strand, within Atu3389 at 434.016 kb on + strand, within Atu3389 at 434.032 kb on + strand, within Atu3389 at 434.032 kb on + strand, within Atu3389 at 434.042 kb on + strand, within Atu3389 at 434.050 kb on - strand, within Atu3389 at 434.059 kb on - strand, within Atu3389 at 434.091 kb on - strand at 434.233 kb on + strand at 434.233 kb on + strand at 434.241 kb on - strand at 434.241 kb on - strand at 434.318 kb on - strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.361 kb on + strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.369 kb on - strand, within Atu3390 at 434.465 kb on + strand, within Atu3390 at 434.481 kb on + strand, within Atu3390 at 434.500 kb on + strand, within Atu3390 at 434.533 kb on - strand, within Atu3390 at 434.621 kb on + strand, within Atu3390 at 434.872 kb on - strand, within Atu3390 at 434.887 kb on + strand, within Atu3390 at 434.930 kb on - strand, within Atu3390 at 434.996 kb on + strand, within Atu3390 at 435.028 kb on + strand, within Atu3390 at 435.050 kb on - strand, within Atu3390 at 435.103 kb on - strand, within Atu3390 at 435.113 kb on - strand, within Atu3390 at 435.173 kb on + strand, within Atu3390 at 435.173 kb on + strand, within Atu3390 at 435.174 kb on + strand, within Atu3390 at 435.220 kb on + strand at 435.231 kb on + strand at 435.239 kb on - strand at 435.318 kb on + strand at 435.370 kb on + strand at 435.409 kb on + strand at 435.417 kb on - strand at 435.599 kb on - strand, within Atu3391 at 435.629 kb on - strand, within Atu3391 at 435.695 kb on + strand, within Atu3391 at 435.703 kb on - strand, within Atu3391 at 435.712 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.739 kb on + strand, within Atu3391 at 435.747 kb on - strand, within Atu3391 at 436.066 kb on + strand, within Atu3391 at 436.236 kb on - strand, within Atu3391
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with tungstate 375 mM remove 433,471 + Atu3389 0.32 +0.6 433,494 + Atu3389 0.34 +0.9 433,502 - Atu3389 0.35 +0.7 433,542 + Atu3389 0.39 +0.3 433,544 + Atu3389 0.39 +0.7 433,550 - Atu3389 0.40 +0.9 433,550 - Atu3389 0.40 +0.5 433,550 - Atu3389 0.40 +0.7 433,578 + Atu3389 0.42 +0.9 433,777 + Atu3389 0.61 +1.0 433,862 + Atu3389 0.69 +0.4 433,897 + Atu3389 0.72 +0.1 433,905 - Atu3389 0.73 +0.7 434,016 + Atu3389 0.83 +0.7 434,032 + Atu3389 0.85 +0.9 434,032 + Atu3389 0.85 +1.0 434,042 + Atu3389 0.86 +0.8 434,050 - Atu3389 0.86 +0.7 434,059 - Atu3389 0.87 +0.5 434,091 - +1.3 434,233 + +0.3 434,233 + -0.3 434,241 - -1.0 434,241 - +1.6 434,318 - Atu3390 0.11 +0.2 434,361 + Atu3390 0.15 +0.5 434,361 + Atu3390 0.15 +0.5 434,361 + Atu3390 0.15 +0.6 434,361 + Atu3390 0.15 +1.0 434,369 - Atu3390 0.16 +0.6 434,369 - Atu3390 0.16 +0.1 434,369 - Atu3390 0.16 +0.7 434,369 - Atu3390 0.16 +0.1 434,465 + Atu3390 0.24 +0.9 434,481 + Atu3390 0.25 +0.0 434,500 + Atu3390 0.27 +1.0 434,533 - Atu3390 0.30 +0.2 434,621 + Atu3390 0.38 -0.3 434,872 - Atu3390 0.60 +0.5 434,887 + Atu3390 0.61 +1.0 434,930 - Atu3390 0.65 -0.1 434,996 + Atu3390 0.71 +0.2 435,028 + Atu3390 0.73 +0.8 435,050 - Atu3390 0.75 +0.8 435,103 - Atu3390 0.80 +0.4 435,113 - Atu3390 0.81 +0.1 435,173 + Atu3390 0.86 -0.2 435,173 + Atu3390 0.86 +0.5 435,174 + Atu3390 0.86 -2.9 435,220 + +0.2 435,231 + +0.3 435,239 - +0.4 435,318 + +0.3 435,370 + +0.2 435,409 + +0.9 435,417 - +0.5 435,599 - Atu3391 0.15 +0.7 435,629 - Atu3391 0.18 -0.5 435,695 + Atu3391 0.24 +0.0 435,703 - Atu3391 0.24 -0.2 435,712 + Atu3391 0.25 +0.0 435,739 + Atu3391 0.27 +0.7 435,739 + Atu3391 0.27 +1.1 435,739 + Atu3391 0.27 +0.3 435,747 - Atu3391 0.28 +0.5 436,066 + Atu3391 0.56 +1.2 436,236 - Atu3391 0.71 +0.8
Or see this region's nucleotide sequence