Strain Fitness in Agrobacterium fabrum C58 around Atu3198

Experiment: R2A with tungstate 375 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3197 and Atu3198 are separated by 72 nucleotidesAtu3198 and Atu3199 are separated by 72 nucleotides Atu3197: Atu3197 - LysR family transcriptional regulator, at 205,919 to 206,812 Atu3197 Atu3198: Atu3198 - ribose ABC transporter substrate-binding protein, at 206,885 to 207,838 Atu3198 Atu3199: Atu3199 - ribose ABC transporter permease, at 207,911 to 208,912 Atu3199 Position (kb) 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 205.912 kb on - strandat 206.081 kb on - strand, within Atu3197at 206.100 kb on - strand, within Atu3197at 206.109 kb on + strand, within Atu3197at 206.154 kb on + strand, within Atu3197at 206.228 kb on - strand, within Atu3197at 206.241 kb on + strand, within Atu3197at 206.338 kb on - strand, within Atu3197at 206.359 kb on + strand, within Atu3197at 206.447 kb on - strand, within Atu3197at 206.563 kb on - strand, within Atu3197at 206.593 kb on + strand, within Atu3197at 206.618 kb on + strand, within Atu3197at 206.660 kb on - strand, within Atu3197at 206.662 kb on + strand, within Atu3197at 206.685 kb on - strand, within Atu3197at 206.818 kb on + strandat 206.906 kb on + strandat 206.957 kb on - strandat 207.183 kb on + strand, within Atu3198at 207.183 kb on + strand, within Atu3198at 207.224 kb on - strand, within Atu3198at 207.295 kb on + strand, within Atu3198at 207.297 kb on + strand, within Atu3198at 207.428 kb on - strand, within Atu3198at 207.536 kb on - strand, within Atu3198at 207.603 kb on + strand, within Atu3198at 207.640 kb on - strand, within Atu3198at 207.652 kb on + strand, within Atu3198at 207.886 kb on + strandat 207.889 kb on - strandat 207.894 kb on - strandat 207.967 kb on + strandat 208.075 kb on - strand, within Atu3199at 208.079 kb on - strand, within Atu3199at 208.145 kb on + strand, within Atu3199at 208.158 kb on - strand, within Atu3199at 208.202 kb on - strand, within Atu3199at 208.287 kb on + strand, within Atu3199at 208.306 kb on - strand, within Atu3199at 208.308 kb on + strand, within Atu3199at 208.313 kb on + strand, within Atu3199at 208.425 kb on - strand, within Atu3199at 208.577 kb on - strand, within Atu3199at 208.587 kb on + strand, within Atu3199at 208.621 kb on - strand, within Atu3199at 208.684 kb on + strand, within Atu3199at 208.701 kb on - strand, within Atu3199

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with tungstate 375 mM
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205,912 - -0.7
206,081 - Atu3197 0.18 +1.2
206,100 - Atu3197 0.20 -0.5
206,109 + Atu3197 0.21 +0.4
206,154 + Atu3197 0.26 +0.1
206,228 - Atu3197 0.35 -0.3
206,241 + Atu3197 0.36 -0.0
206,338 - Atu3197 0.47 +0.7
206,359 + Atu3197 0.49 +0.2
206,447 - Atu3197 0.59 -0.2
206,563 - Atu3197 0.72 -0.2
206,593 + Atu3197 0.75 -0.6
206,618 + Atu3197 0.78 +2.5
206,660 - Atu3197 0.83 -0.4
206,662 + Atu3197 0.83 -0.3
206,685 - Atu3197 0.86 -0.1
206,818 + -0.1
206,906 + +0.5
206,957 - -2.2
207,183 + Atu3198 0.31 -0.5
207,183 + Atu3198 0.31 +0.0
207,224 - Atu3198 0.36 -0.1
207,295 + Atu3198 0.43 -0.4
207,297 + Atu3198 0.43 -0.3
207,428 - Atu3198 0.57 -0.3
207,536 - Atu3198 0.68 -0.5
207,603 + Atu3198 0.75 -0.8
207,640 - Atu3198 0.79 -1.2
207,652 + Atu3198 0.80 -2.3
207,886 + -0.1
207,889 - +0.7
207,894 - -0.9
207,967 + -0.1
208,075 - Atu3199 0.16 -0.5
208,079 - Atu3199 0.17 +1.0
208,145 + Atu3199 0.23 -0.3
208,158 - Atu3199 0.25 -0.7
208,202 - Atu3199 0.29 +0.0
208,287 + Atu3199 0.38 -0.4
208,306 - Atu3199 0.39 +0.0
208,308 + Atu3199 0.40 +0.1
208,313 + Atu3199 0.40 +0.3
208,425 - Atu3199 0.51 -0.4
208,577 - Atu3199 0.66 +1.2
208,587 + Atu3199 0.67 +0.2
208,621 - Atu3199 0.71 -1.4
208,684 + Atu3199 0.77 +0.2
208,701 - Atu3199 0.79 -0.4

Or see this region's nucleotide sequence