Strain Fitness in Agrobacterium fabrum C58 around Atu0312

Experiment: R2A with tungstate 375 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0311 and Atu0312 are separated by 112 nucleotidesAtu0312 and Atu0313 are separated by 140 nucleotidesAtu0313 and Atu0314 are separated by 77 nucleotides Atu0311: Atu0311 - hypothetical protein, at 303,448 to 304,980 Atu0311 Atu0312: Atu0312 - cysteine synthase, at 305,093 to 306,061 Atu0312 Atu0313: Atu0313 - RhtB family transporter, at 306,202 to 306,819 Atu0313 Atu0314: Atu0314 - deoxyuridine 5, at 306,897 to 307,367 Atu0314 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1at 304.129 kb on + strand, within Atu0311at 304.139 kb on + strand, within Atu0311at 304.202 kb on - strand, within Atu0311at 304.233 kb on + strand, within Atu0311at 304.242 kb on + strand, within Atu0311at 304.250 kb on - strand, within Atu0311at 304.252 kb on + strand, within Atu0311at 304.308 kb on + strand, within Atu0311at 304.317 kb on - strand, within Atu0311at 304.382 kb on - strand, within Atu0311at 304.408 kb on + strand, within Atu0311at 304.483 kb on - strand, within Atu0311at 304.513 kb on + strand, within Atu0311at 304.513 kb on + strand, within Atu0311at 304.513 kb on + strand, within Atu0311at 304.521 kb on - strand, within Atu0311at 304.521 kb on - strand, within Atu0311at 304.523 kb on + strand, within Atu0311at 304.632 kb on + strand, within Atu0311at 304.632 kb on + strand, within Atu0311at 304.649 kb on - strand, within Atu0311at 304.654 kb on - strand, within Atu0311at 304.691 kb on + strand, within Atu0311at 304.699 kb on - strand, within Atu0311at 304.699 kb on - strand, within Atu0311at 304.702 kb on + strand, within Atu0311at 304.765 kb on - strand, within Atu0311at 304.902 kb on + strandat 304.995 kb on + strandat 305.061 kb on - strandat 305.068 kb on + strandat 305.074 kb on - strandat 305.223 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.247 kb on + strand, within Atu0312at 305.255 kb on - strand, within Atu0312at 305.255 kb on - strand, within Atu0312at 305.255 kb on - strand, within Atu0312at 305.265 kb on - strand, within Atu0312at 305.335 kb on - strand, within Atu0312at 305.341 kb on + strand, within Atu0312at 305.349 kb on - strand, within Atu0312at 305.360 kb on + strand, within Atu0312at 305.368 kb on - strand, within Atu0312at 305.443 kb on - strand, within Atu0312at 305.510 kb on + strand, within Atu0312at 305.510 kb on + strand, within Atu0312at 305.564 kb on - strand, within Atu0312at 305.610 kb on + strand, within Atu0312at 305.630 kb on - strand, within Atu0312at 305.689 kb on + strand, within Atu0312at 305.694 kb on + strand, within Atu0312at 305.697 kb on - strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.847 kb on + strand, within Atu0312at 305.855 kb on - strand, within Atu0312at 305.855 kb on - strand, within Atu0312at 305.855 kb on - strand, within Atu0312at 305.914 kb on + strand, within Atu0312at 306.063 kb on + strandat 306.071 kb on - strandat 306.073 kb on - strandat 306.109 kb on + strandat 306.126 kb on - strandat 306.255 kb on - strandat 306.268 kb on - strand, within Atu0313at 306.286 kb on - strand, within Atu0313at 306.358 kb on + strand, within Atu0313at 306.361 kb on - strand, within Atu0313at 306.380 kb on - strand, within Atu0313at 306.432 kb on + strand, within Atu0313at 306.553 kb on - strand, within Atu0313at 306.571 kb on - strand, within Atu0313at 306.581 kb on - strand, within Atu0313at 306.609 kb on - strand, within Atu0313at 306.620 kb on - strand, within Atu0313at 306.620 kb on - strand, within Atu0313at 306.634 kb on + strand, within Atu0313at 306.678 kb on + strand, within Atu0313at 306.686 kb on - strand, within Atu0313at 306.724 kb on - strand, within Atu0313at 306.786 kb on - strandat 306.786 kb on - strandat 306.786 kb on - strandat 306.796 kb on + strandat 306.796 kb on + strandat 306.796 kb on + strandat 306.804 kb on - strandat 306.804 kb on - strandat 306.804 kb on - strandat 306.874 kb on - strandat 306.904 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with tungstate 375 mM
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304,129 + Atu0311 0.44 -0.7
304,139 + Atu0311 0.45 -1.1
304,202 - Atu0311 0.49 -0.4
304,233 + Atu0311 0.51 -0.4
304,242 + Atu0311 0.52 -0.3
304,250 - Atu0311 0.52 +0.0
304,252 + Atu0311 0.52 +0.1
304,308 + Atu0311 0.56 +0.0
304,317 - Atu0311 0.57 -0.3
304,382 - Atu0311 0.61 -1.3
304,408 + Atu0311 0.63 +1.2
304,483 - Atu0311 0.68 -0.3
304,513 + Atu0311 0.69 +0.2
304,513 + Atu0311 0.69 +0.2
304,513 + Atu0311 0.69 +0.2
304,521 - Atu0311 0.70 -0.4
304,521 - Atu0311 0.70 +0.1
304,523 + Atu0311 0.70 -0.2
304,632 + Atu0311 0.77 -0.1
304,632 + Atu0311 0.77 -0.4
304,649 - Atu0311 0.78 -0.2
304,654 - Atu0311 0.79 -0.0
304,691 + Atu0311 0.81 -0.3
304,699 - Atu0311 0.82 +0.2
304,699 - Atu0311 0.82 -1.1
304,702 + Atu0311 0.82 +0.2
304,765 - Atu0311 0.86 +0.2
304,902 + -0.2
304,995 + +0.1
305,061 - -0.7
305,068 + -1.3
305,074 - -0.1
305,223 + Atu0312 0.13 -0.8
305,247 + Atu0312 0.16 -0.2
305,247 + Atu0312 0.16 +0.5
305,247 + Atu0312 0.16 -0.8
305,247 + Atu0312 0.16 -1.0
305,247 + Atu0312 0.16 -1.0
305,255 - Atu0312 0.17 -0.6
305,255 - Atu0312 0.17 +0.3
305,255 - Atu0312 0.17 -0.2
305,265 - Atu0312 0.18 -0.4
305,335 - Atu0312 0.25 -0.7
305,341 + Atu0312 0.26 -0.4
305,349 - Atu0312 0.26 -0.5
305,360 + Atu0312 0.28 -0.5
305,368 - Atu0312 0.28 -1.6
305,443 - Atu0312 0.36 -0.4
305,510 + Atu0312 0.43 -0.5
305,510 + Atu0312 0.43 -0.5
305,564 - Atu0312 0.49 -0.2
305,610 + Atu0312 0.53 -1.5
305,630 - Atu0312 0.55 -0.2
305,689 + Atu0312 0.62 -0.2
305,694 + Atu0312 0.62 +0.2
305,697 - Atu0312 0.62 -0.8
305,847 + Atu0312 0.78 +0.5
305,847 + Atu0312 0.78 -0.2
305,847 + Atu0312 0.78 -1.9
305,847 + Atu0312 0.78 -0.8
305,855 - Atu0312 0.79 -1.1
305,855 - Atu0312 0.79 -0.5
305,855 - Atu0312 0.79 -1.4
305,914 + Atu0312 0.85 -0.7
306,063 + -0.4
306,071 - +0.3
306,073 - -0.5
306,109 + -0.2
306,126 - -0.3
306,255 - +0.2
306,268 - Atu0313 0.11 +0.8
306,286 - Atu0313 0.14 -0.1
306,358 + Atu0313 0.25 -0.2
306,361 - Atu0313 0.26 -0.3
306,380 - Atu0313 0.29 +0.2
306,432 + Atu0313 0.37 -0.3
306,553 - Atu0313 0.57 -0.6
306,571 - Atu0313 0.60 +0.1
306,581 - Atu0313 0.61 +0.9
306,609 - Atu0313 0.66 -0.5
306,620 - Atu0313 0.68 -0.8
306,620 - Atu0313 0.68 +0.1
306,634 + Atu0313 0.70 -0.2
306,678 + Atu0313 0.77 +0.1
306,686 - Atu0313 0.78 +0.2
306,724 - Atu0313 0.84 -0.1
306,786 - -0.2
306,786 - +0.4
306,786 - -0.3
306,796 + -1.9
306,796 + +0.7
306,796 + -0.9
306,804 - -0.0
306,804 - -0.4
306,804 - +0.1
306,874 - +0.6
306,904 - -0.3

Or see this region's nucleotide sequence