Experiment: R2A with Chloride 700 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0387 and Atu0388 are separated by 194 nucleotides Atu0388 and Atu8009 are separated by 78 nucleotides Atu8009 and Atu0389 are separated by 37 nucleotides Atu0389 and Atu0390 are separated by 180 nucleotides
Atu0387: Atu0387 - methyl-accepting chemotaxis protein, at 378,771 to 380,819
Atu0387
Atu0388: Atu0388 - two component sensor kinase, at 381,014 to 382,489
Atu0388
Atu8009: Atu8009 - hypothetical protein, at 382,568 to 382,669
Atu8009
Atu0389: Atu0389 - tRNA-Arg, at 382,707 to 382,783
Atu0389
Atu0390: Atu0390 - ubiquinone/menaquinone biosynthesis methyltransferase, at 382,964 to 383,776
Atu0390
Position (kb) 381
382
383 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 380.097 kb on + strand, within Atu0387 at 380.277 kb on - strand, within Atu0387 at 380.362 kb on + strand, within Atu0387 at 380.471 kb on - strand, within Atu0387 at 380.484 kb on - strand, within Atu0387 at 380.515 kb on + strand, within Atu0387 at 380.552 kb on - strand, within Atu0387 at 380.599 kb on - strand, within Atu0387 at 380.658 kb on - strand at 380.752 kb on + strand at 380.780 kb on - strand at 380.787 kb on + strand at 380.806 kb on - strand at 380.820 kb on - strand at 380.854 kb on - strand at 380.943 kb on + strand at 380.999 kb on + strand at 381.001 kb on + strand at 381.029 kb on + strand at 381.034 kb on - strand at 381.036 kb on + strand at 381.036 kb on + strand at 381.077 kb on + strand at 381.180 kb on + strand, within Atu0388 at 381.197 kb on + strand, within Atu0388 at 381.310 kb on + strand, within Atu0388 at 381.310 kb on + strand, within Atu0388 at 381.434 kb on - strand, within Atu0388 at 381.470 kb on + strand, within Atu0388 at 381.503 kb on - strand, within Atu0388 at 381.503 kb on - strand, within Atu0388 at 381.503 kb on - strand, within Atu0388 at 381.593 kb on - strand, within Atu0388 at 381.736 kb on - strand, within Atu0388 at 381.769 kb on - strand, within Atu0388 at 381.823 kb on + strand, within Atu0388 at 381.847 kb on + strand, within Atu0388 at 381.852 kb on + strand, within Atu0388 at 381.853 kb on - strand, within Atu0388 at 381.862 kb on + strand, within Atu0388 at 381.862 kb on + strand, within Atu0388 at 381.870 kb on - strand, within Atu0388 at 381.901 kb on + strand, within Atu0388 at 381.925 kb on + strand, within Atu0388 at 381.933 kb on + strand, within Atu0388 at 381.933 kb on - strand, within Atu0388 at 381.952 kb on - strand, within Atu0388 at 381.965 kb on + strand, within Atu0388 at 381.965 kb on + strand, within Atu0388 at 382.003 kb on + strand, within Atu0388 at 382.023 kb on + strand, within Atu0388 at 382.031 kb on + strand, within Atu0388 at 382.226 kb on + strand, within Atu0388 at 382.347 kb on + strand at 382.366 kb on - strand at 382.469 kb on - strand at 382.474 kb on + strand at 382.482 kb on - strand at 382.526 kb on - strand at 382.526 kb on - strand at 382.526 kb on - strand at 382.527 kb on - strand at 382.885 kb on + strand at 382.893 kb on - strand at 382.921 kb on + strand at 382.929 kb on + strand at 382.936 kb on + strand at 382.947 kb on - strand at 383.016 kb on + strand at 383.027 kb on - strand at 383.177 kb on - strand, within Atu0390 at 383.178 kb on + strand, within Atu0390 at 383.178 kb on + strand, within Atu0390 at 383.268 kb on - strand, within Atu0390 at 383.268 kb on - strand, within Atu0390 at 383.313 kb on - strand, within Atu0390 at 383.429 kb on + strand, within Atu0390
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 700 mM remove 380,097 + Atu0387 0.65 -1.6 380,277 - Atu0387 0.73 +0.9 380,362 + Atu0387 0.78 -0.0 380,471 - Atu0387 0.83 -0.2 380,484 - Atu0387 0.84 +0.3 380,515 + Atu0387 0.85 +0.1 380,552 - Atu0387 0.87 +0.6 380,599 - Atu0387 0.89 -0.1 380,658 - -0.5 380,752 + -0.4 380,780 - +0.4 380,787 + -0.0 380,806 - +0.2 380,820 - +1.3 380,854 - -0.1 380,943 + +1.1 380,999 + +1.6 381,001 + +0.5 381,029 + -0.3 381,034 - -0.7 381,036 + -3.1 381,036 + -2.9 381,077 + -2.2 381,180 + Atu0388 0.11 -1.9 381,197 + Atu0388 0.12 -2.4 381,310 + Atu0388 0.20 -2.3 381,310 + Atu0388 0.20 -1.8 381,434 - Atu0388 0.28 -2.2 381,470 + Atu0388 0.31 -0.1 381,503 - Atu0388 0.33 -1.8 381,503 - Atu0388 0.33 -2.0 381,503 - Atu0388 0.33 -2.9 381,593 - Atu0388 0.39 -2.2 381,736 - Atu0388 0.49 -0.4 381,769 - Atu0388 0.51 -3.2 381,823 + Atu0388 0.55 -2.7 381,847 + Atu0388 0.56 -0.4 381,852 + Atu0388 0.57 -2.5 381,853 - Atu0388 0.57 -1.7 381,862 + Atu0388 0.57 -1.5 381,862 + Atu0388 0.57 -1.7 381,870 - Atu0388 0.58 -2.1 381,901 + Atu0388 0.60 -1.5 381,925 + Atu0388 0.62 -1.6 381,933 + Atu0388 0.62 -2.2 381,933 - Atu0388 0.62 -1.7 381,952 - Atu0388 0.64 -0.0 381,965 + Atu0388 0.64 -2.5 381,965 + Atu0388 0.64 -3.1 382,003 + Atu0388 0.67 -2.5 382,023 + Atu0388 0.68 -2.5 382,031 + Atu0388 0.69 +1.8 382,226 + Atu0388 0.82 +0.4 382,347 + -0.5 382,366 - -3.7 382,469 - -2.3 382,474 + -0.8 382,482 - -2.1 382,526 - +0.1 382,526 - +0.0 382,526 - +0.3 382,527 - -0.2 382,885 + -0.6 382,893 - +0.5 382,921 + -0.2 382,929 + -0.3 382,936 + +0.1 382,947 - +0.3 383,016 + +0.1 383,027 - -0.0 383,177 - Atu0390 0.26 +0.8 383,178 + Atu0390 0.26 +0.1 383,178 + Atu0390 0.26 -0.0 383,268 - Atu0390 0.37 +0.6 383,268 - Atu0390 0.37 +1.0 383,313 - Atu0390 0.43 +1.6 383,429 + Atu0390 0.57 -0.3
Or see this region's nucleotide sequence