Experiment: R2A with Chloride 700 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0188 and Atu0189 overlap by 1 nucleotides Atu0189 and Atu0190 are separated by 5 nucleotides
Atu0188: Atu0188 - ABC transporter, membrane spanning protein (peptide), at 191,514 to 192,608
Atu0188
Atu0189: Atu0189 - ABC transporter, membrane spanning protein (peptide), at 192,608 to 193,753
Atu0189
Atu0190: Atu0190 - ABC transporter, nucleotide binding/ATPase protein (peptide), at 193,759 to 195,399
Atu0190
Position (kb) 192
193
194 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 191.669 kb on + strand, within Atu0188 at 191.760 kb on - strand, within Atu0188 at 191.937 kb on - strand, within Atu0188 at 192.427 kb on - strand, within Atu0188 at 192.507 kb on + strand at 192.633 kb on + strand at 192.649 kb on + strand at 192.685 kb on - strand at 192.716 kb on + strand at 192.959 kb on - strand, within Atu0189 at 193.621 kb on + strand, within Atu0189 at 193.635 kb on - strand, within Atu0189 at 193.647 kb on + strand at 193.647 kb on + strand at 193.655 kb on - strand at 193.725 kb on + strand at 193.735 kb on + strand at 193.825 kb on + strand at 193.864 kb on - strand at 194.003 kb on + strand, within Atu0190 at 194.025 kb on + strand, within Atu0190 at 194.362 kb on - strand, within Atu0190 at 194.388 kb on + strand, within Atu0190 at 194.466 kb on + strand, within Atu0190 at 194.497 kb on - strand, within Atu0190 at 194.507 kb on - strand, within Atu0190 at 194.520 kb on + strand, within Atu0190 at 194.529 kb on - strand, within Atu0190 at 194.687 kb on + strand, within Atu0190 at 194.704 kb on + strand, within Atu0190
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloride 700 mM remove 191,669 + Atu0188 0.14 -2.8 191,760 - Atu0188 0.22 -1.1 191,937 - Atu0188 0.39 -4.5 192,427 - Atu0188 0.83 -2.7 192,507 + -2.8 192,633 + -2.6 192,649 + -3.3 192,685 - -2.6 192,716 + -1.1 192,959 - Atu0189 0.31 -2.8 193,621 + Atu0189 0.88 -2.0 193,635 - Atu0189 0.90 -3.0 193,647 + -0.1 193,647 + -3.2 193,655 - -3.4 193,725 + -1.1 193,735 + -0.1 193,825 + -0.8 193,864 - -3.4 194,003 + Atu0190 0.15 -2.2 194,025 + Atu0190 0.16 -2.7 194,362 - Atu0190 0.37 -1.0 194,388 + Atu0190 0.38 -3.5 194,466 + Atu0190 0.43 -1.8 194,497 - Atu0190 0.45 -4.5 194,507 - Atu0190 0.46 -0.7 194,520 + Atu0190 0.46 -3.5 194,529 - Atu0190 0.47 -2.6 194,687 + Atu0190 0.57 +0.3 194,704 + Atu0190 0.58 -2.0
Or see this region's nucleotide sequence