Experiment: R2A with Aluminum chloride 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu4600 and Atu4601 are separated by 475 nucleotides Atu4601 and Atu4602 overlap by 4 nucleotides Atu4602 and Atu4603 are separated by 74 nucleotides Atu4603 and Atu4604 are separated by 15 nucleotides
Atu4600: Atu4600 - ABC transporter permease, at 1,745,721 to 1,747,484
Atu4600
Atu4601: Atu4601 - IS426 transposase, at 1,747,960 to 1,748,787
Atu4601
Atu4602: Atu4602 - IS426 transposase, at 1,748,784 to 1,749,173
Atu4602
Atu4603: Atu4603 - IS3 family transposase, at 1,749,248 to 1,749,556
Atu4603
Atu4604: Atu4604 - IS3 family transposase, at 1,749,572 to 1,750,501
Atu4604
Position (kb)
1747
1748
1749 Strain fitness (log2 ratio)
-1
0
1
2 at 1747.782 kb on - strand at 1747.784 kb on + strand at 1747.792 kb on - strand at 1747.898 kb on - strand at 1747.902 kb on + strand at 1747.971 kb on - strand at 1749.252 kb on + strand at 1749.475 kb on + strand, within Atu4603 at 1749.534 kb on - strand at 1749.592 kb on - strand at 1749.614 kb on + strand at 1749.774 kb on - strand, within Atu4604
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Aluminum chloride 0.3 mM remove 1,747,782 - +0.0 1,747,784 + +1.5 1,747,792 - +0.1 1,747,898 - -1.2 1,747,902 + +0.2 1,747,971 - -0.1 1,749,252 + +0.4 1,749,475 + Atu4603 0.73 +1.8 1,749,534 - +0.7 1,749,592 - +0.6 1,749,614 + +0.3 1,749,774 - Atu4604 0.22 +0.0
Or see this region's nucleotide sequence