Strain Fitness in Agrobacterium fabrum C58 around Atu2554
Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Manganese (II) chloride tetrahydrate 5 mM |
---|---|---|---|---|---|
remove | |||||
2,526,975 | - | -0.4 | |||
2,526,975 | - | +0.1 | |||
2,527,069 | - | -0.0 | |||
2,527,086 | - | -0.4 | |||
2,527,716 | - | -0.2 | |||
2,527,802 | + | -0.2 | |||
2,527,934 | - | -0.1 | |||
2,527,952 | + | -1.9 | |||
2,527,962 | - | -1.8 | |||
2,528,125 | - | Atu2554 | 0.20 | +0.1 | |
2,528,152 | + | Atu2554 | 0.22 | -1.3 | |
2,528,214 | - | Atu2554 | 0.28 | -2.8 | |
2,528,513 | + | Atu2554 | 0.56 | -1.3 | |
2,528,574 | - | Atu2554 | 0.62 | -1.4 | |
2,529,245 | + | Atu2555 | 0.27 | -1.8 | |
2,529,245 | + | Atu2555 | 0.27 | -0.8 | |
2,529,335 | + | Atu2555 | 0.35 | +0.8 | |
2,529,494 | + | Atu2555 | 0.50 | -0.4 | |
2,529,568 | - | Atu2555 | 0.57 | +0.0 | |
2,529,660 | - | Atu2555 | 0.65 | -0.7 | |
2,529,771 | + | Atu2555 | 0.75 | -0.3 | |
2,529,948 | - | -0.7 |
Or see this region's nucleotide sequence