Strain Fitness in Agrobacterium fabrum C58 around Atu0145

Experiment: R2A with Manganese (II) chloride tetrahydrate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0143 and Atu0144 are separated by 65 nucleotidesAtu0144 and Atu0145 are separated by 274 nucleotidesAtu0145 and Atu0146 overlap by 4 nucleotides Atu0143: Atu0143 - MFS permease, at 147,053 to 148,375 Atu0143 Atu0144: Atu0144 - hypothetical protein, at 148,441 to 148,662 Atu0144 Atu0145: Atu0145 - glutamate synthase large subunit, at 148,937 to 154,285 Atu0145 Atu0146: Atu0146 - sulfite reductase (NADPH) flavoprotein alpha-component, at 154,282 to 156,051 Atu0146 Position (kb) 148 149 150 151 152 153 154 155Strain fitness (log2 ratio) -2 -1 0 1 2at 147.999 kb on + strand, within Atu0143at 148.042 kb on - strand, within Atu0143at 148.072 kb on + strand, within Atu0143at 148.092 kb on + strand, within Atu0143at 148.164 kb on + strand, within Atu0143at 148.228 kb on + strand, within Atu0143at 148.308 kb on + strandat 148.330 kb on + strandat 148.783 kb on + strandat 148.878 kb on + strandat 148.888 kb on + strandat 148.917 kb on - strandat 148.922 kb on - strandat 148.922 kb on - strandat 149.184 kb on + strandat 149.272 kb on + strandat 149.277 kb on + strandat 149.287 kb on - strandat 149.302 kb on + strandat 149.310 kb on - strandat 149.326 kb on - strandat 149.362 kb on + strandat 149.366 kb on + strandat 149.366 kb on + strandat 149.375 kb on + strandat 149.383 kb on - strandat 149.385 kb on + strandat 149.493 kb on - strand, within Atu0145at 149.495 kb on + strand, within Atu0145at 149.530 kb on + strand, within Atu0145at 149.538 kb on - strand, within Atu0145at 149.575 kb on - strand, within Atu0145at 149.643 kb on - strand, within Atu0145at 149.697 kb on - strand, within Atu0145at 149.860 kb on + strand, within Atu0145at 149.868 kb on - strand, within Atu0145at 149.976 kb on + strand, within Atu0145at 150.157 kb on + strand, within Atu0145at 150.165 kb on - strand, within Atu0145at 150.165 kb on - strand, within Atu0145at 150.165 kb on - strand, within Atu0145at 150.217 kb on + strand, within Atu0145at 150.248 kb on + strand, within Atu0145at 150.287 kb on + strand, within Atu0145at 150.325 kb on + strand, within Atu0145at 150.333 kb on - strand, within Atu0145at 150.390 kb on + strand, within Atu0145at 150.398 kb on - strand, within Atu0145at 150.441 kb on + strand, within Atu0145at 150.445 kb on + strand, within Atu0145at 150.569 kb on + strand, within Atu0145at 150.577 kb on - strand, within Atu0145at 150.670 kb on + strand, within Atu0145at 150.760 kb on + strand, within Atu0145at 150.910 kb on + strand, within Atu0145at 150.930 kb on - strand, within Atu0145at 151.072 kb on + strand, within Atu0145at 151.072 kb on + strand, within Atu0145at 151.082 kb on + strand, within Atu0145at 151.098 kb on - strand, within Atu0145at 151.179 kb on - strand, within Atu0145at 151.338 kb on + strand, within Atu0145at 151.352 kb on - strand, within Atu0145at 151.436 kb on - strand, within Atu0145at 151.469 kb on + strand, within Atu0145at 151.531 kb on - strand, within Atu0145at 151.536 kb on + strand, within Atu0145at 151.536 kb on + strand, within Atu0145at 151.536 kb on + strand, within Atu0145at 151.611 kb on + strand, within Atu0145at 151.619 kb on - strand, within Atu0145at 151.619 kb on - strand, within Atu0145at 151.619 kb on - strand, within Atu0145at 151.703 kb on + strand, within Atu0145at 151.714 kb on + strand, within Atu0145at 151.714 kb on + strand, within Atu0145at 151.720 kb on + strand, within Atu0145at 151.729 kb on - strand, within Atu0145at 151.765 kb on - strand, within Atu0145at 151.959 kb on + strand, within Atu0145at 152.059 kb on + strand, within Atu0145at 152.191 kb on - strand, within Atu0145at 152.196 kb on - strand, within Atu0145at 152.206 kb on + strand, within Atu0145at 152.214 kb on - strand, within Atu0145at 152.297 kb on + strand, within Atu0145at 152.297 kb on + strand, within Atu0145at 152.300 kb on + strand, within Atu0145at 152.300 kb on + strand, within Atu0145at 152.420 kb on + strand, within Atu0145at 152.448 kb on + strand, within Atu0145at 152.448 kb on + strand, within Atu0145at 152.628 kb on - strand, within Atu0145at 152.655 kb on + strand, within Atu0145at 152.682 kb on + strand, within Atu0145at 152.682 kb on + strand, within Atu0145at 152.682 kb on + strand, within Atu0145at 152.682 kb on + strand, within Atu0145at 152.689 kb on - strand, within Atu0145at 152.689 kb on - strand, within Atu0145at 152.713 kb on + strand, within Atu0145at 152.727 kb on + strand, within Atu0145at 152.848 kb on - strand, within Atu0145at 152.853 kb on - strand, within Atu0145at 152.879 kb on - strand, within Atu0145at 152.884 kb on - strand, within Atu0145at 152.889 kb on - strand, within Atu0145at 153.007 kb on + strand, within Atu0145at 153.241 kb on - strand, within Atu0145at 153.258 kb on + strand, within Atu0145at 153.276 kb on - strand, within Atu0145at 153.302 kb on + strand, within Atu0145at 153.318 kb on + strand, within Atu0145at 153.401 kb on + strand, within Atu0145at 153.428 kb on + strand, within Atu0145at 153.512 kb on + strand, within Atu0145at 153.559 kb on + strand, within Atu0145at 153.559 kb on + strand, within Atu0145at 153.624 kb on - strand, within Atu0145at 153.754 kb on - strandat 153.776 kb on - strandat 153.805 kb on + strandat 153.830 kb on + strandat 153.888 kb on - strandat 153.888 kb on - strandat 153.890 kb on - strandat 153.898 kb on - strandat 153.900 kb on - strandat 153.907 kb on + strandat 153.910 kb on - strandat 153.910 kb on - strandat 153.944 kb on - strandat 153.944 kb on - strandat 153.953 kb on - strandat 154.012 kb on - strandat 154.026 kb on - strandat 154.107 kb on - strandat 154.109 kb on + strandat 154.109 kb on + strandat 154.152 kb on + strandat 154.174 kb on - strandat 154.223 kb on - strandat 154.241 kb on + strandat 154.245 kb on - strandat 154.273 kb on - strandat 154.275 kb on + strandat 154.278 kb on - strandat 154.325 kb on - strandat 154.557 kb on - strand, within Atu0146at 154.654 kb on + strand, within Atu0146at 154.757 kb on + strand, within Atu0146at 154.840 kb on + strand, within Atu0146at 154.848 kb on - strand, within Atu0146at 154.953 kb on + strand, within Atu0146at 154.953 kb on + strand, within Atu0146at 154.994 kb on + strand, within Atu0146at 155.012 kb on - strand, within Atu0146at 155.037 kb on + strand, within Atu0146at 155.078 kb on + strand, within Atu0146at 155.124 kb on - strand, within Atu0146at 155.275 kb on - strand, within Atu0146at 155.276 kb on - strand, within Atu0146

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Manganese (II) chloride tetrahydrate 5 mM
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147,999 + Atu0143 0.72 +0.3
148,042 - Atu0143 0.75 +0.2
148,072 + Atu0143 0.77 +0.3
148,092 + Atu0143 0.79 +0.2
148,164 + Atu0143 0.84 -0.7
148,228 + Atu0143 0.89 +0.0
148,308 + +0.7
148,330 + -0.0
148,783 + +0.1
148,878 + -0.9
148,888 + +1.7
148,917 - -0.1
148,922 - -1.5
148,922 - +0.1
149,184 + +0.3
149,272 + -0.4
149,277 + -0.2
149,287 - +1.5
149,302 + +0.1
149,310 - -2.4
149,326 - -0.3
149,362 + -1.5
149,366 + -0.1
149,366 + -0.2
149,375 + +0.5
149,383 - -0.1
149,385 + -0.4
149,493 - Atu0145 0.10 +0.2
149,495 + Atu0145 0.10 -1.0
149,530 + Atu0145 0.11 -0.6
149,538 - Atu0145 0.11 -0.0
149,575 - Atu0145 0.12 -1.5
149,643 - Atu0145 0.13 +0.8
149,697 - Atu0145 0.14 +0.0
149,860 + Atu0145 0.17 +0.1
149,868 - Atu0145 0.17 -0.6
149,976 + Atu0145 0.19 -0.6
150,157 + Atu0145 0.23 -0.3
150,165 - Atu0145 0.23 +0.1
150,165 - Atu0145 0.23 -0.9
150,165 - Atu0145 0.23 -0.3
150,217 + Atu0145 0.24 +0.1
150,248 + Atu0145 0.25 -0.3
150,287 + Atu0145 0.25 -0.2
150,325 + Atu0145 0.26 -0.2
150,333 - Atu0145 0.26 -0.1
150,390 + Atu0145 0.27 -1.2
150,398 - Atu0145 0.27 -0.0
150,441 + Atu0145 0.28 -0.7
150,445 + Atu0145 0.28 -0.4
150,569 + Atu0145 0.31 -0.3
150,577 - Atu0145 0.31 -0.2
150,670 + Atu0145 0.32 -0.3
150,760 + Atu0145 0.34 -0.4
150,910 + Atu0145 0.37 +0.5
150,930 - Atu0145 0.37 -0.5
151,072 + Atu0145 0.40 +0.5
151,072 + Atu0145 0.40 -0.3
151,082 + Atu0145 0.40 +0.3
151,098 - Atu0145 0.40 +0.2
151,179 - Atu0145 0.42 -0.3
151,338 + Atu0145 0.45 -0.6
151,352 - Atu0145 0.45 -0.2
151,436 - Atu0145 0.47 -0.1
151,469 + Atu0145 0.47 +1.1
151,531 - Atu0145 0.48 -0.1
151,536 + Atu0145 0.49 -0.5
151,536 + Atu0145 0.49 -0.3
151,536 + Atu0145 0.49 +0.1
151,611 + Atu0145 0.50 -0.4
151,619 - Atu0145 0.50 -0.5
151,619 - Atu0145 0.50 -0.1
151,619 - Atu0145 0.50 -0.3
151,703 + Atu0145 0.52 -0.9
151,714 + Atu0145 0.52 -0.1
151,714 + Atu0145 0.52 -0.4
151,720 + Atu0145 0.52 +0.3
151,729 - Atu0145 0.52 -0.4
151,765 - Atu0145 0.53 -0.8
151,959 + Atu0145 0.56 +0.0
152,059 + Atu0145 0.58 -1.7
152,191 - Atu0145 0.61 -1.0
152,196 - Atu0145 0.61 -0.4
152,206 + Atu0145 0.61 +0.1
152,214 - Atu0145 0.61 +1.3
152,297 + Atu0145 0.63 -0.2
152,297 + Atu0145 0.63 -0.7
152,300 + Atu0145 0.63 -0.2
152,300 + Atu0145 0.63 +0.3
152,420 + Atu0145 0.65 +1.2
152,448 + Atu0145 0.66 +0.1
152,448 + Atu0145 0.66 +1.5
152,628 - Atu0145 0.69 +0.0
152,655 + Atu0145 0.70 +2.0
152,682 + Atu0145 0.70 +0.2
152,682 + Atu0145 0.70 -0.3
152,682 + Atu0145 0.70 +0.1
152,682 + Atu0145 0.70 -0.1
152,689 - Atu0145 0.70 -0.1
152,689 - Atu0145 0.70 -0.5
152,713 + Atu0145 0.71 -0.3
152,727 + Atu0145 0.71 -0.1
152,848 - Atu0145 0.73 -0.3
152,853 - Atu0145 0.73 -0.1
152,879 - Atu0145 0.74 -0.2
152,884 - Atu0145 0.74 -0.8
152,889 - Atu0145 0.74 -0.1
153,007 + Atu0145 0.76 +0.0
153,241 - Atu0145 0.80 -0.7
153,258 + Atu0145 0.81 -0.0
153,276 - Atu0145 0.81 -0.1
153,302 + Atu0145 0.82 -0.4
153,318 + Atu0145 0.82 +0.5
153,401 + Atu0145 0.83 +0.8
153,428 + Atu0145 0.84 -1.4
153,512 + Atu0145 0.86 +0.0
153,559 + Atu0145 0.86 -0.4
153,559 + Atu0145 0.86 -0.1
153,624 - Atu0145 0.88 +0.1
153,754 - +0.1
153,776 - +0.5
153,805 + -0.3
153,830 + -0.3
153,888 - +0.5
153,888 - -0.3
153,890 - -0.5
153,898 - +0.6
153,900 - -0.5
153,907 + -0.1
153,910 - -0.5
153,910 - -0.2
153,944 - -1.1
153,944 - +1.0
153,953 - +0.3
154,012 - -0.2
154,026 - -0.2
154,107 - +0.3
154,109 + -0.2
154,109 + -0.0
154,152 + -0.2
154,174 - -0.3
154,223 - +0.1
154,241 + -0.0
154,245 - +1.2
154,273 - +0.3
154,275 + -0.5
154,278 - -0.2
154,325 - -0.2
154,557 - Atu0146 0.16 -0.3
154,654 + Atu0146 0.21 -0.3
154,757 + Atu0146 0.27 -0.8
154,840 + Atu0146 0.32 +0.8
154,848 - Atu0146 0.32 -0.2
154,953 + Atu0146 0.38 +0.6
154,953 + Atu0146 0.38 +0.6
154,994 + Atu0146 0.40 -0.1
155,012 - Atu0146 0.41 -0.3
155,037 + Atu0146 0.43 +0.1
155,078 + Atu0146 0.45 -0.5
155,124 - Atu0146 0.48 -0.2
155,275 - Atu0146 0.56 -0.7
155,276 - Atu0146 0.56 -0.2

Or see this region's nucleotide sequence