Strain Fitness in Agrobacterium fabrum C58 around Atu5069

Experiment: R2A with Chromium(III) Chloride Hexahydrate 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5068 and Atu5069 overlap by 8 nucleotidesAtu5069 and Atu5070 are separated by 14 nucleotides Atu5068: Atu5068 - ABC transporter nucleotide binding/ATPase (oligopeptide), at 66,348 to 67,967 Atu5068 Atu5069: Atu5069 - ABC transporter membrane spanning protein (oligopeptide), at 67,960 to 68,907 Atu5069 Atu5070: Atu5070 - ABC transporter membrane spanning protein (oligopeptide), at 68,922 to 69,836 Atu5070 Position (kb) 67 68 69Strain fitness (log2 ratio) -2 -1 0 1 2 3at 66.962 kb on - strand, within Atu5068at 67.128 kb on + strand, within Atu5068at 67.158 kb on + strand, within Atu5068at 67.165 kb on + strand, within Atu5068at 67.167 kb on - strand, within Atu5068at 67.167 kb on - strand, within Atu5068at 67.173 kb on + strand, within Atu5068at 67.221 kb on - strand, within Atu5068at 67.330 kb on - strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.369 kb on + strand, within Atu5068at 67.377 kb on - strand, within Atu5068at 67.377 kb on - strand, within Atu5068at 67.396 kb on - strand, within Atu5068at 67.410 kb on - strand, within Atu5068at 67.528 kb on + strand, within Atu5068at 67.560 kb on - strand, within Atu5068at 67.570 kb on + strand, within Atu5068at 67.570 kb on + strand, within Atu5068at 67.578 kb on - strand, within Atu5068at 67.583 kb on - strand, within Atu5068at 67.633 kb on - strand, within Atu5068at 67.648 kb on + strand, within Atu5068at 67.656 kb on - strand, within Atu5068at 67.695 kb on + strand, within Atu5068at 67.703 kb on - strand, within Atu5068at 67.749 kb on + strand, within Atu5068at 67.762 kb on - strand, within Atu5068at 67.820 kb on - strandat 67.826 kb on + strandat 67.834 kb on - strandat 67.878 kb on + strandat 67.897 kb on + strandat 67.905 kb on - strandat 68.004 kb on - strandat 68.004 kb on - strandat 68.006 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.009 kb on - strandat 68.154 kb on - strand, within Atu5069at 68.187 kb on - strand, within Atu5069at 68.224 kb on + strand, within Atu5069at 68.242 kb on + strand, within Atu5069at 68.364 kb on - strand, within Atu5069at 68.404 kb on + strand, within Atu5069at 68.539 kb on - strand, within Atu5069at 68.539 kb on - strand, within Atu5069at 68.551 kb on - strand, within Atu5069at 68.571 kb on + strand, within Atu5069at 68.645 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.736 kb on + strand, within Atu5069at 68.739 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.744 kb on - strand, within Atu5069at 68.807 kb on + strand, within Atu5069at 68.885 kb on + strandat 68.885 kb on + strandat 68.893 kb on - strandat 68.950 kb on + strandat 68.988 kb on + strandat 69.108 kb on + strand, within Atu5070at 69.136 kb on - strand, within Atu5070at 69.220 kb on + strand, within Atu5070at 69.220 kb on + strand, within Atu5070at 69.220 kb on + strand, within Atu5070at 69.220 kb on + strand, within Atu5070at 69.228 kb on - strand, within Atu5070at 69.228 kb on - strand, within Atu5070at 69.228 kb on - strand, within Atu5070at 69.228 kb on - strand, within Atu5070at 69.238 kb on - strand, within Atu5070at 69.259 kb on - strand, within Atu5070at 69.281 kb on + strand, within Atu5070at 69.510 kb on - strand, within Atu5070at 69.546 kb on + strand, within Atu5070at 69.546 kb on + strand, within Atu5070at 69.547 kb on - strand, within Atu5070at 69.573 kb on + strand, within Atu5070at 69.574 kb on - strand, within Atu5070at 69.618 kb on + strand, within Atu5070at 69.666 kb on + strand, within Atu5070at 69.669 kb on - strand, within Atu5070at 69.673 kb on - strand, within Atu5070at 69.682 kb on + strand, within Atu5070at 69.794 kb on + strandat 69.842 kb on + strandat 69.855 kb on + strandat 69.887 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chromium(III) Chloride Hexahydrate 0.02 mM
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66,962 - Atu5068 0.38 +0.6
67,128 + Atu5068 0.48 -1.1
67,158 + Atu5068 0.50 +2.8
67,165 + Atu5068 0.50 -0.6
67,167 - Atu5068 0.51 -0.8
67,167 - Atu5068 0.51 +0.6
67,173 + Atu5068 0.51 -0.5
67,221 - Atu5068 0.54 +0.3
67,330 - Atu5068 0.61 -0.3
67,369 + Atu5068 0.63 -0.1
67,369 + Atu5068 0.63 -0.2
67,369 + Atu5068 0.63 +1.3
67,369 + Atu5068 0.63 +0.5
67,369 + Atu5068 0.63 +0.9
67,377 - Atu5068 0.64 -0.7
67,377 - Atu5068 0.64 -0.2
67,396 - Atu5068 0.65 -0.1
67,410 - Atu5068 0.66 +1.0
67,528 + Atu5068 0.73 +0.1
67,560 - Atu5068 0.75 -0.8
67,570 + Atu5068 0.75 -0.3
67,570 + Atu5068 0.75 +0.2
67,578 - Atu5068 0.76 -0.5
67,583 - Atu5068 0.76 -0.9
67,633 - Atu5068 0.79 -0.3
67,648 + Atu5068 0.80 -0.4
67,656 - Atu5068 0.81 -0.6
67,695 + Atu5068 0.83 +0.0
67,703 - Atu5068 0.84 +0.2
67,749 + Atu5068 0.86 -0.5
67,762 - Atu5068 0.87 -0.4
67,820 - +0.4
67,826 + +0.1
67,834 - +0.2
67,878 + +0.2
67,897 + -1.2
67,905 - -0.4
68,004 - -0.2
68,004 - -0.4
68,006 - +0.1
68,009 - -0.7
68,009 - -0.1
68,009 - +0.0
68,009 - -0.2
68,009 - +0.8
68,154 - Atu5069 0.20 -0.1
68,187 - Atu5069 0.24 -0.4
68,224 + Atu5069 0.28 -0.1
68,242 + Atu5069 0.30 +0.3
68,364 - Atu5069 0.43 -0.3
68,404 + Atu5069 0.47 -0.8
68,539 - Atu5069 0.61 -0.2
68,539 - Atu5069 0.61 -0.3
68,551 - Atu5069 0.62 +0.1
68,571 + Atu5069 0.64 -2.2
68,645 + Atu5069 0.72 -0.5
68,736 + Atu5069 0.82 +0.1
68,736 + Atu5069 0.82 -1.4
68,736 + Atu5069 0.82 -0.3
68,736 + Atu5069 0.82 +0.0
68,739 - Atu5069 0.82 -0.3
68,744 - Atu5069 0.83 -0.9
68,744 - Atu5069 0.83 -1.0
68,744 - Atu5069 0.83 -0.2
68,744 - Atu5069 0.83 -1.2
68,807 + Atu5069 0.89 -0.9
68,885 + -0.9
68,885 + +0.3
68,893 - -0.8
68,950 + -1.4
68,988 + -0.2
69,108 + Atu5070 0.20 +0.2
69,136 - Atu5070 0.23 -0.3
69,220 + Atu5070 0.33 -0.3
69,220 + Atu5070 0.33 -0.4
69,220 + Atu5070 0.33 -1.1
69,220 + Atu5070 0.33 -1.5
69,228 - Atu5070 0.33 +0.1
69,228 - Atu5070 0.33 +0.0
69,228 - Atu5070 0.33 +0.2
69,228 - Atu5070 0.33 +0.3
69,238 - Atu5070 0.35 -0.0
69,259 - Atu5070 0.37 -0.6
69,281 + Atu5070 0.39 +0.2
69,510 - Atu5070 0.64 +0.2
69,546 + Atu5070 0.68 -0.1
69,546 + Atu5070 0.68 +0.0
69,547 - Atu5070 0.68 -0.1
69,573 + Atu5070 0.71 -1.7
69,574 - Atu5070 0.71 +1.0
69,618 + Atu5070 0.76 -0.1
69,666 + Atu5070 0.81 -0.9
69,669 - Atu5070 0.82 -0.2
69,673 - Atu5070 0.82 -0.1
69,682 + Atu5070 0.83 +0.2
69,794 + +0.1
69,842 + +0.9
69,855 + -0.1
69,887 - -0.4

Or see this region's nucleotide sequence