Experiment: R2A control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu8116 and Atu0156 are separated by 12 nucleotides Atu0156 and Atu0157 are separated by 146 nucleotides Atu0157 and Atu0158 are separated by 138 nucleotides Atu0158 and Atu0159 overlap by 1 nucleotides
Atu8116: Atu8116 - hypothetical protein, at 161,618 to 162,136
Atu8116
Atu0156: Atu0156 - hypothetical protein, at 162,149 to 162,859
Atu0156
Atu0157: Atu0157 - ABC transporter, substrate binding protein, at 163,006 to 164,007
Atu0157
Atu0158: Atu0158 - ABC transporter, membrane spanning protein, at 164,146 to 164,919
Atu0158
Atu0159: Atu0159 - ABC transporter, nucleotide binding/ATPase protein, at 164,919 to 165,704
Atu0159
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1 at 162.175 kb on + strand at 162.220 kb on - strand, within Atu0156 at 162.269 kb on + strand, within Atu0156 at 162.272 kb on - strand, within Atu0156 at 162.349 kb on + strand, within Atu0156 at 162.440 kb on + strand, within Atu0156 at 162.441 kb on + strand, within Atu0156 at 162.711 kb on - strand, within Atu0156 at 162.717 kb on + strand, within Atu0156 at 162.745 kb on + strand, within Atu0156 at 162.753 kb on - strand, within Atu0156 at 162.807 kb on - strand at 162.807 kb on - strand at 162.828 kb on - strand at 162.903 kb on + strand at 162.911 kb on - strand at 163.103 kb on - strand at 163.114 kb on + strand, within Atu0157 at 163.122 kb on - strand, within Atu0157 at 163.143 kb on - strand, within Atu0157 at 163.182 kb on - strand, within Atu0157 at 163.386 kb on - strand, within Atu0157 at 163.406 kb on + strand, within Atu0157 at 163.422 kb on + strand, within Atu0157 at 163.422 kb on + strand, within Atu0157 at 163.428 kb on + strand, within Atu0157 at 163.428 kb on + strand, within Atu0157 at 163.524 kb on - strand, within Atu0157 at 163.532 kb on + strand, within Atu0157 at 163.667 kb on - strand, within Atu0157 at 163.737 kb on + strand, within Atu0157 at 163.757 kb on + strand, within Atu0157 at 163.757 kb on + strand, within Atu0157 at 163.767 kb on + strand, within Atu0157 at 163.767 kb on + strand, within Atu0157 at 163.767 kb on + strand, within Atu0157 at 163.775 kb on - strand, within Atu0157 at 163.775 kb on - strand, within Atu0157 at 163.959 kb on + strand at 163.993 kb on + strand at 163.994 kb on - strand at 164.073 kb on - strand at 164.084 kb on + strand at 164.153 kb on + strand at 164.155 kb on + strand at 164.155 kb on + strand at 164.164 kb on + strand at 164.164 kb on + strand at 164.221 kb on + strand at 164.221 kb on + strand at 164.359 kb on - strand, within Atu0158 at 164.427 kb on + strand, within Atu0158 at 164.447 kb on - strand, within Atu0158 at 164.480 kb on - strand, within Atu0158 at 164.491 kb on + strand, within Atu0158 at 164.613 kb on + strand, within Atu0158 at 164.621 kb on - strand, within Atu0158 at 164.621 kb on - strand, within Atu0158 at 164.624 kb on + strand, within Atu0158 at 164.624 kb on + strand, within Atu0158 at 164.624 kb on + strand, within Atu0158 at 164.656 kb on - strand, within Atu0158 at 164.719 kb on + strand, within Atu0158 at 164.724 kb on + strand, within Atu0158 at 164.725 kb on + strand, within Atu0158 at 164.733 kb on - strand, within Atu0158 at 164.744 kb on - strand, within Atu0158 at 164.813 kb on - strand, within Atu0158 at 164.848 kb on + strand at 164.857 kb on - strand at 164.896 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A control remove 162,175 + +0.1 162,220 - Atu0156 0.10 +1.4 162,269 + Atu0156 0.17 -0.3 162,272 - Atu0156 0.17 -0.1 162,349 + Atu0156 0.28 +1.5 162,440 + Atu0156 0.41 -0.5 162,441 + Atu0156 0.41 +0.3 162,711 - Atu0156 0.79 -0.1 162,717 + Atu0156 0.80 -0.9 162,745 + Atu0156 0.84 -1.4 162,753 - Atu0156 0.85 +0.1 162,807 - +0.1 162,807 - -0.0 162,828 - +0.0 162,903 + +0.3 162,911 - +0.6 163,103 - +0.3 163,114 + Atu0157 0.11 -0.1 163,122 - Atu0157 0.12 +0.0 163,143 - Atu0157 0.14 -0.0 163,182 - Atu0157 0.18 +0.8 163,386 - Atu0157 0.38 -0.8 163,406 + Atu0157 0.40 +0.4 163,422 + Atu0157 0.42 +0.7 163,422 + Atu0157 0.42 +1.3 163,428 + Atu0157 0.42 +0.4 163,428 + Atu0157 0.42 +0.4 163,524 - Atu0157 0.52 -0.0 163,532 + Atu0157 0.52 -0.2 163,667 - Atu0157 0.66 +0.5 163,737 + Atu0157 0.73 -0.1 163,757 + Atu0157 0.75 -1.0 163,757 + Atu0157 0.75 -0.2 163,767 + Atu0157 0.76 -0.8 163,767 + Atu0157 0.76 +0.0 163,767 + Atu0157 0.76 -0.5 163,775 - Atu0157 0.77 -0.2 163,775 - Atu0157 0.77 -0.7 163,959 + -0.0 163,993 + -0.1 163,994 - +0.4 164,073 - +0.9 164,084 + -0.2 164,153 + -0.2 164,155 + +0.3 164,155 + +0.8 164,164 + -0.0 164,164 + -0.1 164,221 + +0.0 164,221 + -0.7 164,359 - Atu0158 0.28 +0.2 164,427 + Atu0158 0.36 +0.0 164,447 - Atu0158 0.39 +0.1 164,480 - Atu0158 0.43 -0.3 164,491 + Atu0158 0.45 +0.3 164,613 + Atu0158 0.60 -1.1 164,621 - Atu0158 0.61 -2.4 164,621 - Atu0158 0.61 -0.3 164,624 + Atu0158 0.62 +0.2 164,624 + Atu0158 0.62 -0.2 164,624 + Atu0158 0.62 -0.7 164,656 - Atu0158 0.66 -1.0 164,719 + Atu0158 0.74 +0.2 164,724 + Atu0158 0.75 +0.7 164,725 + Atu0158 0.75 -0.1 164,733 - Atu0158 0.76 -0.3 164,744 - Atu0158 0.77 +0.7 164,813 - Atu0158 0.86 -0.2 164,848 + +0.2 164,857 - -1.6 164,896 - +0.1
Or see this region's nucleotide sequence