Strain Fitness in Agrobacterium fabrum C58 around Atu0653

Experiment: R2A control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0652 and Atu0653 are separated by 367 nucleotidesAtu0653 and Atu0654 are separated by 40 nucleotides Atu0652: Atu0652 - hypothetical protein, at 644,810 to 645,376 Atu0652 Atu0653: Atu0653 - hypothetical protein, at 645,744 to 648,182 Atu0653 Atu0654: Atu0654 - transcriptional regulator, LysR family, at 648,223 to 649,173 Atu0654 Position (kb) 645 646 647 648 649Strain fitness (log2 ratio) -1 0 1at 645.529 kb on + strandat 645.553 kb on + strandat 645.563 kb on + strandat 645.667 kb on - strandat 645.708 kb on + strandat 645.722 kb on - strandat 645.729 kb on + strandat 645.763 kb on + strandat 645.771 kb on - strandat 645.808 kb on + strandat 645.808 kb on + strandat 645.823 kb on - strandat 645.949 kb on + strandat 645.957 kb on - strandat 646.001 kb on - strand, within Atu0653at 646.050 kb on + strand, within Atu0653at 646.050 kb on + strand, within Atu0653at 646.058 kb on - strand, within Atu0653at 646.080 kb on + strand, within Atu0653at 646.088 kb on - strand, within Atu0653at 646.356 kb on + strand, within Atu0653at 646.404 kb on - strand, within Atu0653at 646.461 kb on + strand, within Atu0653at 646.470 kb on + strand, within Atu0653at 646.529 kb on + strand, within Atu0653at 646.529 kb on + strand, within Atu0653at 646.529 kb on + strand, within Atu0653at 646.537 kb on - strand, within Atu0653at 646.554 kb on + strand, within Atu0653at 646.590 kb on + strand, within Atu0653at 646.604 kb on + strand, within Atu0653at 646.612 kb on - strand, within Atu0653at 646.648 kb on - strand, within Atu0653at 646.727 kb on + strand, within Atu0653at 646.727 kb on + strand, within Atu0653at 646.735 kb on - strand, within Atu0653at 646.750 kb on + strand, within Atu0653at 646.756 kb on - strand, within Atu0653at 646.831 kb on + strand, within Atu0653at 646.891 kb on - strand, within Atu0653at 647.063 kb on - strand, within Atu0653at 647.082 kb on - strand, within Atu0653at 647.146 kb on - strand, within Atu0653at 647.149 kb on + strand, within Atu0653at 647.149 kb on + strand, within Atu0653at 647.157 kb on - strand, within Atu0653at 647.196 kb on + strand, within Atu0653at 647.196 kb on + strand, within Atu0653at 647.196 kb on + strand, within Atu0653at 647.196 kb on + strand, within Atu0653at 647.196 kb on + strand, within Atu0653at 647.203 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.204 kb on - strand, within Atu0653at 647.256 kb on + strand, within Atu0653at 647.265 kb on + strand, within Atu0653at 647.265 kb on + strand, within Atu0653at 647.273 kb on - strand, within Atu0653at 647.273 kb on - strand, within Atu0653at 647.286 kb on + strand, within Atu0653at 647.335 kb on + strand, within Atu0653at 647.480 kb on + strand, within Atu0653at 647.488 kb on - strand, within Atu0653at 647.555 kb on + strand, within Atu0653at 647.637 kb on - strand, within Atu0653at 647.687 kb on - strand, within Atu0653at 647.751 kb on + strand, within Atu0653at 647.799 kb on - strand, within Atu0653at 647.981 kb on + strandat 648.118 kb on - strandat 648.159 kb on + strandat 648.185 kb on - strandat 648.191 kb on + strandat 648.224 kb on + strandat 648.456 kb on - strand, within Atu0654at 648.468 kb on - strand, within Atu0654at 648.522 kb on + strand, within Atu0654at 648.615 kb on + strand, within Atu0654at 648.671 kb on + strand, within Atu0654at 648.679 kb on - strand, within Atu0654at 648.689 kb on + strand, within Atu0654at 648.697 kb on - strand, within Atu0654at 648.702 kb on - strand, within Atu0654at 648.778 kb on + strand, within Atu0654at 648.793 kb on - strand, within Atu0654at 648.893 kb on - strand, within Atu0654at 648.999 kb on + strand, within Atu0654at 649.131 kb on + strandat 649.147 kb on - strandat 649.156 kb on + strandat 649.156 kb on + strandat 649.164 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A control
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645,529 + -0.4
645,553 + +0.5
645,563 + +0.1
645,667 - +0.1
645,708 + +0.6
645,722 - +0.2
645,729 + +0.3
645,763 + +0.4
645,771 - +0.8
645,808 + +0.5
645,808 + +0.3
645,823 - +0.1
645,949 + +0.9
645,957 - +0.6
646,001 - Atu0653 0.11 +0.4
646,050 + Atu0653 0.13 +0.5
646,050 + Atu0653 0.13 +0.5
646,058 - Atu0653 0.13 +0.5
646,080 + Atu0653 0.14 +0.8
646,088 - Atu0653 0.14 +0.6
646,356 + Atu0653 0.25 +0.8
646,404 - Atu0653 0.27 -0.1
646,461 + Atu0653 0.29 +0.3
646,470 + Atu0653 0.30 +0.8
646,529 + Atu0653 0.32 +0.1
646,529 + Atu0653 0.32 +0.8
646,529 + Atu0653 0.32 +0.3
646,537 - Atu0653 0.33 +0.5
646,554 + Atu0653 0.33 +0.8
646,590 + Atu0653 0.35 -0.2
646,604 + Atu0653 0.35 +0.3
646,612 - Atu0653 0.36 -0.1
646,648 - Atu0653 0.37 +0.5
646,727 + Atu0653 0.40 +0.7
646,727 + Atu0653 0.40 +0.5
646,735 - Atu0653 0.41 +0.9
646,750 + Atu0653 0.41 +0.4
646,756 - Atu0653 0.41 +0.5
646,831 + Atu0653 0.45 +0.7
646,891 - Atu0653 0.47 +0.3
647,063 - Atu0653 0.54 +0.2
647,082 - Atu0653 0.55 +0.6
647,146 - Atu0653 0.57 +0.4
647,149 + Atu0653 0.58 +0.7
647,149 + Atu0653 0.58 +0.3
647,157 - Atu0653 0.58 +0.1
647,196 + Atu0653 0.60 +0.7
647,196 + Atu0653 0.60 +0.6
647,196 + Atu0653 0.60 +0.2
647,196 + Atu0653 0.60 -0.1
647,196 + Atu0653 0.60 +0.7
647,203 - Atu0653 0.60 +0.4
647,204 - Atu0653 0.60 +0.3
647,204 - Atu0653 0.60 +1.1
647,204 - Atu0653 0.60 +0.3
647,204 - Atu0653 0.60 +0.4
647,204 - Atu0653 0.60 +1.2
647,204 - Atu0653 0.60 +0.4
647,204 - Atu0653 0.60 +0.6
647,256 + Atu0653 0.62 +0.2
647,265 + Atu0653 0.62 +0.9
647,265 + Atu0653 0.62 +1.2
647,273 - Atu0653 0.63 +0.7
647,273 - Atu0653 0.63 +0.3
647,286 + Atu0653 0.63 +0.6
647,335 + Atu0653 0.65 +0.7
647,480 + Atu0653 0.71 +0.2
647,488 - Atu0653 0.72 +0.6
647,555 + Atu0653 0.74 +0.4
647,637 - Atu0653 0.78 +0.5
647,687 - Atu0653 0.80 +1.5
647,751 + Atu0653 0.82 +0.3
647,799 - Atu0653 0.84 +0.3
647,981 + +1.0
648,118 - -1.1
648,159 + -1.1
648,185 - +0.1
648,191 + -0.0
648,224 + +0.5
648,456 - Atu0654 0.25 +0.2
648,468 - Atu0654 0.26 +1.2
648,522 + Atu0654 0.31 -0.9
648,615 + Atu0654 0.41 +0.1
648,671 + Atu0654 0.47 -0.2
648,679 - Atu0654 0.48 -0.6
648,689 + Atu0654 0.49 +0.1
648,697 - Atu0654 0.50 -0.5
648,702 - Atu0654 0.50 -1.5
648,778 + Atu0654 0.58 -0.3
648,793 - Atu0654 0.60 -0.1
648,893 - Atu0654 0.70 -0.1
648,999 + Atu0654 0.82 -0.2
649,131 + -0.2
649,147 - -0.4
649,156 + -0.3
649,156 + +0.8
649,164 - -1.1

Or see this region's nucleotide sequence