Strain Fitness in Escherichia coli BW25113 around b3544

Experiment: Outgrowth from conjugation with pRH23 in LB+Gent50+Kan100

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Outgrowth from conjugation with pRH23 in LB+Gent50+Kan100
3,703,149	-	dppB	b3543	0.35	+0.5
3,703,151	-	dppB	b3543	0.35	-0.5
3,703,173	+	dppB	b3543	0.37	-0.1
3,703,229	+	dppB	b3543	0.43	-0.6
3,703,229	+	dppB	b3543	0.43	+0.1
3,703,256	-	dppB	b3543	0.45	+1.5
3,703,294	+	dppB	b3543	0.49	+0.7
3,703,310	-	dppB	b3543	0.51	-0.8
3,703,363	-	dppB	b3543	0.56	+0.0
3,703,363	-	dppB	b3543	0.56	+0.0
3,703,477	-	dppB	b3543	0.67	+0.3
3,703,516	-	dppB	b3543	0.71	-0.6
3,703,589	+	dppB	b3543	0.78	-0.3
3,703,589	+	dppB	b3543	0.78	+0.3
3,703,589	+	dppB	b3543	0.78	+0.3
3,703,718	+				-0.2
3,703,737	-				+0.7
3,703,753	+				+0.7
3,703,756	-				-0.3
3,703,761	-				-0.1
3,703,761	-				-0.2
3,703,824	+				-0.2
3,703,831	-				+0.2
3,703,854	+				+0.3
3,703,862	-				-0.1
3,703,951	-				-0.7
3,703,951	-				-0.2
3,704,215	-				+0.2
3,704,236	-				-0.7
3,704,246	+				-0.5
3,704,246	-				+0.1
3,704,248	+				+0.4
3,704,271	-				+0.3
3,704,281	-				-0.2
3,704,355	+	dppA	b3544	0.15	+0.1
3,704,366	+	dppA	b3544	0.15	+0.2
3,704,366	+	dppA	b3544	0.15	-0.2
3,704,382	+	dppA	b3544	0.16	-0.7
3,704,382	+	dppA	b3544	0.16	-0.0
3,704,388	-	dppA	b3544	0.17	-0.3
3,704,436	+	dppA	b3544	0.20	-0.1
3,704,470	+	dppA	b3544	0.22	+0.1
3,704,472	+	dppA	b3544	0.22	-0.3
3,704,475	+	dppA	b3544	0.22	+0.4
3,704,478	+	dppA	b3544	0.22	-0.1
3,704,481	-	dppA	b3544	0.22	-0.1
3,704,481	-	dppA	b3544	0.22	-0.6
3,704,481	-	dppA	b3544	0.22	+0.3
3,704,481	-	dppA	b3544	0.22	-0.6
3,704,486	-	dppA	b3544	0.23	-0.9
3,704,503	+	dppA	b3544	0.24	-0.0
3,704,526	+	dppA	b3544	0.25	+0.5
3,704,540	+	dppA	b3544	0.26	+0.2
3,704,551	+	dppA	b3544	0.27	-0.0
3,704,643	-	dppA	b3544	0.32	+0.6
3,704,654	-	dppA	b3544	0.33	-0.1
3,704,666	+	dppA	b3544	0.34	-0.0
3,704,666	+	dppA	b3544	0.34	+0.1
3,704,668	+	dppA	b3544	0.34	+0.1
3,704,668	+	dppA	b3544	0.34	-1.3
3,704,676	+	dppA	b3544	0.35	+0.4
3,704,686	-	dppA	b3544	0.35	-0.4
3,704,782	+	dppA	b3544	0.41	+0.1
3,704,787	+	dppA	b3544	0.41	+0.3
3,704,787	+	dppA	b3544	0.41	+0.7
3,704,844	-	dppA	b3544	0.45	-0.8
3,704,844	-	dppA	b3544	0.45	+0.2
3,704,844	-	dppA	b3544	0.45	+0.7
3,705,093	-	dppA	b3544	0.60	+0.1
3,705,181	-	dppA	b3544	0.66	-0.3
3,705,223	-	dppA	b3544	0.69	-0.4
3,705,223	-	dppA	b3544	0.69	-0.7
3,705,233	-	dppA	b3544	0.69	-0.3
3,705,233	-	dppA	b3544	0.69	-0.4
3,705,266	+	dppA	b3544	0.71	+0.2
3,705,278	+	dppA	b3544	0.72	-0.6
3,705,278	+	dppA	b3544	0.72	+0.1
3,705,291	-	dppA	b3544	0.73	-0.3
3,705,372	+	dppA	b3544	0.78	+0.4
3,705,372	+	dppA	b3544	0.78	+0.1
3,705,374	+	dppA	b3544	0.78	+0.1
3,705,454	-	dppA	b3544	0.83	+0.2
3,705,462	-	dppA	b3544	0.83	+0.5
3,705,505	-	dppA	b3544	0.86	+0.8
3,705,505	-	dppA	b3544	0.86	+0.0
3,705,543	+	dppA	b3544	0.88	+0.4
3,705,551	-	dppA	b3544	0.89	+0.4
3,705,551	-	dppA	b3544	0.89	+0.5
3,705,554	+	dppA	b3544	0.89	+0.7
3,705,626	-				+0.2
3,705,653	+				+0.8
3,705,653	+				-0.1
3,705,675	-				+0.4
3,705,680	+				+0.3
3,705,687	-				-0.8
3,705,687	-				-0.5
3,705,699	-				+0.2
3,705,756	+				+0.5
3,705,756	+				+0.5
3,705,828	-				+0.8
3,705,830	-				-0.1
3,705,855	+				+0.2
3,705,855	+				+0.6
3,705,855	+				-0.2
3,705,857	+				-0.1
3,705,857	+				-0.6
3,705,963	-				+0.3
3,705,971	-				+0.2
3,705,971	-				-0.5
3,706,127	+				-0.0
3,706,175	+				+0.0
3,706,183	-				-0.7
3,706,255	+				-0.2
3,706,310	-				-0.6
3,706,334	-				+0.5
3,706,374	+				-0.1
3,706,374	+				-0.3
3,706,374	+				+0.0
3,706,382	-				+0.2
3,706,399	+				+0.3
3,706,399	+				-0.2
3,706,399	+				-2.0
3,706,409	+				-0.0
3,706,409	-				+0.2
3,706,409	-				-0.1
3,706,431	-				+0.1
3,706,479	+				+0.1
3,706,485	-				+0.1
3,706,485	-				+0.2
3,706,485	-				+1.0
3,706,485	-				+0.3
3,706,499	+				-0.1
3,706,506	-				+0.4
3,706,506	-				-0.3
3,706,547	+				-0.2
3,706,565	-				+0.1
3,706,693	+	proK	b3545	0.70	-0.4
3,706,701	-	proK	b3545	0.81	+0.1
3,706,701	-	proK	b3545	0.81	+0.6