Strain Fitness in Escherichia coli BW25113 around b4186

Experiment: Outgrowth from conjugation with pRH22 in LB+Gent50+Kan100

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Outgrowth from conjugation with pRH22 in LB+Gent50+Kan100
4,410,164	-	yjfL	b4184	0.41	-0.7
4,410,164	-	yjfL	b4184	0.41	+0.6
4,410,167	-	yjfL	b4184	0.41	-2.5
4,410,167	-	yjfL	b4184	0.41	+2.2
4,410,177	-	yjfL	b4184	0.44	-1.4
4,410,177	-	yjfL	b4184	0.44	+0.8
4,410,182	+	yjfL	b4184	0.45	+1.6
4,410,182	+	yjfL	b4184	0.45	+0.0
4,410,184	-	yjfL	b4184	0.46	+0.5
4,410,189	+	yjfL	b4184	0.47	+2.6
4,410,190	-	yjfL	b4184	0.47	-0.4
4,410,190	-	yjfL	b4184	0.47	-0.4
4,410,190	-	yjfL	b4184	0.47	+0.4
4,410,190	-	yjfL	b4184	0.47	+3.2
4,410,190	-	yjfL	b4184	0.47	-2.2
4,410,195	-	yjfL	b4184	0.48	+0.4
4,410,206	-	yjfL	b4184	0.51	+2.8
4,410,207	-	yjfL	b4184	0.51	+0.6
4,410,215	+	yjfL	b4184	0.53	-0.5
4,410,221	-	yjfL	b4184	0.55	+1.6
4,410,228	-	yjfL	b4184	0.57	+0.6
4,410,228	-	yjfL	b4184	0.57	+2.2
4,410,248	+	yjfL	b4184	0.62	-1.4
4,410,256	-	yjfL	b4184	0.64	-1.7
4,410,282	+	yjfL	b4184	0.70	+1.9
4,410,294	-	yjfL	b4184	0.73	+0.0
4,410,379	-				-1.0
4,410,385	+				-1.1
4,410,392	+				+0.6
4,410,393	-				-0.5
4,410,393	-				+0.0
4,410,395	-				+0.2
4,410,400	-				-0.8
4,410,400	-				+0.3
4,410,404	-				+0.3
4,410,405	-				-0.1
4,410,405	-				-1.7
4,410,405	-				-2.0
4,410,407	+				+1.6
4,410,407	+				-2.0
4,410,407	+				-2.1
4,410,447	-				-0.4
4,410,471	+				-0.6
4,410,477	-	yjfM	b4185	0.10	+1.2
4,410,477	-	yjfM	b4185	0.10	+0.1
4,410,479	-	yjfM	b4185	0.11	+0.7
4,410,489	-	yjfM	b4185	0.12	+1.6
4,410,497	-	yjfM	b4185	0.14	-1.1
4,410,515	-	yjfM	b4185	0.16	+0.1
4,410,515	-	yjfM	b4185	0.16	+0.4
4,410,539	+	yjfM	b4185	0.20	+2.3
4,410,547	-	yjfM	b4185	0.21	-0.5
4,410,547	-	yjfM	b4185	0.21	-0.6
4,410,549	-	yjfM	b4185	0.22	+1.6
4,410,575	+	yjfM	b4185	0.26	-1.1
4,410,579	-	yjfM	b4185	0.26	-0.1
4,410,590	-	yjfM	b4185	0.28	+0.2
4,410,591	-	yjfM	b4185	0.28	+0.1
4,410,632	-	yjfM	b4185	0.35	-0.5
4,410,637	-	yjfM	b4185	0.36	-1.1
4,410,637	-	yjfM	b4185	0.36	-0.5
4,410,637	-	yjfM	b4185	0.36	+0.0
4,410,637	-	yjfM	b4185	0.36	-0.9
4,410,642	-	yjfM	b4185	0.36	+0.7
4,410,647	-	yjfM	b4185	0.37	-0.1
4,410,647	-	yjfM	b4185	0.37	+0.2
4,410,647	-	yjfM	b4185	0.37	-0.6
4,410,647	-	yjfM	b4185	0.37	-1.4
4,410,659	-	yjfM	b4185	0.39	+0.6
4,410,685	-	yjfM	b4185	0.43	-0.0
4,410,685	-	yjfM	b4185	0.43	+0.3
4,410,691	-	yjfM	b4185	0.44	-0.2
4,410,731	+	yjfM	b4185	0.50	-1.3
4,410,731	+	yjfM	b4185	0.50	+0.0
4,410,745	+	yjfM	b4185	0.52	+0.5
4,410,745	+	yjfM	b4185	0.52	-0.4
4,410,753	-	yjfM	b4185	0.54	-0.6
4,410,784	-	yjfM	b4185	0.59	-1.2
4,410,792	-	yjfM	b4185	0.60	-0.0
4,410,854	+	yjfM	b4185	0.69	+0.4
4,410,862	-	yjfM	b4185	0.71	-0.2
4,410,862	-	yjfM	b4185	0.71	-2.2
4,410,876	+	yjfM	b4185	0.73	-0.2
4,410,891	-	yjfM	b4185	0.75	-0.6
4,410,893	+	yjfM	b4185	0.76	+0.9
4,410,906	+	yjfM	b4185	0.78	-0.4
4,410,906	+	yjfM	b4185	0.78	-0.1
4,410,955	+	yjfM	b4185	0.85	+0.3
4,411,147	+				-0.3
4,411,260	-	yjfC	b4186	0.18	+4.8
4,411,298	+	yjfC	b4186	0.21	+1.2
4,411,298	+	yjfC	b4186	0.21	+0.0
4,411,357	+	yjfC	b4186	0.26	-0.2
4,411,376	-	yjfC	b4186	0.28	-0.3
4,411,398	+	yjfC	b4186	0.30	+0.5
4,411,398	+	yjfC	b4186	0.30	+0.3
4,411,579	+	yjfC	b4186	0.45	+0.6
4,411,585	-	yjfC	b4186	0.46	-0.7
4,411,642	+	yjfC	b4186	0.51	+0.4
4,411,643	-	yjfC	b4186	0.51	+0.1
4,411,704	-	yjfC	b4186	0.56	-1.2
4,411,704	-	yjfC	b4186	0.56	-0.2
4,411,730	-	yjfC	b4186	0.58	-0.3
4,411,740	+	yjfC	b4186	0.59	-0.2
4,411,805	+	yjfC	b4186	0.65	+0.5
4,411,863	-	yjfC	b4186	0.70	+0.4
4,411,863	-	yjfC	b4186	0.70	+0.5
4,411,872	+	yjfC	b4186	0.71	-0.2
4,411,900	-	yjfC	b4186	0.73	+2.0
4,411,900	-	yjfC	b4186	0.73	+0.5
4,411,904	+	yjfC	b4186	0.73	+0.4
4,411,904	+	yjfC	b4186	0.73	+0.6
4,411,958	-	yjfC	b4186	0.78	+0.2
4,412,034	-	yjfC	b4186	0.84	-0.8
4,412,064	+	yjfC	b4186	0.87	+1.0
4,412,064	+	yjfC	b4186	0.87	-0.2
4,412,101	-				-0.3
4,412,101	-				-0.5
4,412,146	-				-0.1
4,412,246	-				+0.2
4,412,252	+				-0.1
4,412,270	-				-0.8
4,412,282	-				+0.4
4,412,286	+				-0.1
4,412,319	+				+0.3
4,412,338	-				+0.2
4,412,338	-				+0.1
4,412,360	-				+0.5
4,412,378	+				+0.3
4,412,449	-				+0.5
4,412,449	-				+0.1
4,412,564	-	aidB	b4187	0.16	+0.4
4,412,611	+	aidB	b4187	0.19	-0.3
4,412,611	+	aidB	b4187	0.19	+0.8
4,412,670	+	aidB	b4187	0.23	-0.2
4,412,670	+	aidB	b4187	0.23	+0.0
4,412,712	-	aidB	b4187	0.25	-0.8
4,412,793	-	aidB	b4187	0.30	+0.0
4,412,901	-	aidB	b4187	0.37	-0.2
4,412,908	-	aidB	b4187	0.38	-0.2
4,413,002	+	aidB	b4187	0.43	+0.2
4,413,002	+	aidB	b4187	0.43	+0.5
4,413,088	+	aidB	b4187	0.49	-0.4
4,413,088	-	aidB	b4187	0.49	-0.4
4,413,123	+	aidB	b4187	0.51	+0.7