Strain Fitness in Escherichia coli BW25113 around b3374

Experiment: Outgrowth from conjugation with pRH22 in LB+Gent50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Outgrowth from conjugation with pRH22 in LB+Gent50
3,500,192	+	yhfN	b3371	0.88	-0.2
3,500,237	-				+0.6
3,500,237	-				-0.9
3,500,239	+				+0.1
3,500,245	-				+1.0
3,500,318	+				+0.2
3,500,318	+				+0.2
3,500,364	+				-0.2
3,500,400	+				+0.0
3,500,437	+				-2.2
3,500,445	-	frlC	b4474	0.10	-0.2
3,500,476	-	frlC	b4474	0.14	-0.2
3,500,548	+	frlC	b4474	0.22	+0.3
3,500,548	+	frlC	b4474	0.22	-1.3
3,500,569	+	frlC	b4474	0.25	-0.1
3,500,588	+	frlC	b4474	0.27	+0.2
3,500,591	-	frlC	b4474	0.28	-0.6
3,500,595	-	frlC	b4474	0.28	+0.5
3,500,605	+	frlC	b4474	0.29	-0.6
3,500,605	+	frlC	b4474	0.29	-0.8
3,500,625	-	frlC	b4474	0.32	-0.4
3,500,625	-	frlC	b4474	0.32	-0.1
3,500,649	+	frlC	b4474	0.35	-0.4
3,500,680	-	frlC	b4474	0.38	-0.4
3,500,711	-	frlC	b4474	0.42	-0.1
3,500,718	+	frlC	b4474	0.43	+0.2
3,500,718	+	frlC	b4474	0.43	-0.0
3,500,726	-	frlC	b4474	0.44	+0.8
3,500,739	+	frlC	b4474	0.45	-0.1
3,500,763	+	frlC	b4474	0.48	+0.2
3,500,763	+	frlC	b4474	0.48	-0.2
3,500,763	+	frlC	b4474	0.48	-0.1
3,500,763	+	frlC	b4474	0.48	-0.6
3,500,767	-	frlC	b4474	0.49	+0.2
3,500,789	+	frlC	b4474	0.51	-0.5
3,500,815	-	frlC	b4474	0.55	-1.5
3,500,830	+	frlC	b4474	0.56	-0.0
3,500,833	+	frlC	b4474	0.57	+0.1
3,500,861	+	frlC	b4474	0.60	-0.2
3,500,861	-	frlC	b4474	0.60	-0.3
3,500,861	-	frlC	b4474	0.60	-0.5
3,500,899	+	frlC	b4474	0.65	-0.1
3,501,008	-	frlC	b4474	0.78	-0.2
3,501,020	-	frlC	b4474	0.79	+0.0
3,501,028	-	frlC	b4474	0.80	+0.1
3,501,035	+	frlC	b4474	0.81	+0.5
3,501,035	+	frlC	b4474	0.81	-0.1
3,501,062	+	frlC	b4474	0.84	-0.8
3,501,062	+	frlC	b4474	0.84	-0.1
3,501,090	+	frlC	b4474	0.88	+1.4
3,501,098	-	frlC	b4474	0.89	-0.1
3,501,100	-	frlC	b4474	0.89	+0.6
3,501,105	+	frlC	b4474	0.89	-0.0
3,501,114	+				-1.5
3,501,114	+				-0.5
3,501,114	+				-0.4
3,501,123	-				-1.0
3,501,123	-				+0.5
3,501,125	+				+0.6
3,501,169	+				-0.1
3,501,169	+				+0.0
3,501,178	+				-0.2
3,501,239	+				+0.4
3,501,240	-				-0.2
3,501,284	+	frlD	b3374	0.12	+0.4
3,501,292	-	frlD	b3374	0.13	-0.2
3,501,330	+	frlD	b3374	0.18	-0.1
3,501,382	-	frlD	b3374	0.25	+0.4
3,501,410	+	frlD	b3374	0.28	+0.4
3,501,498	-	frlD	b3374	0.39	-0.3
3,501,498	-	frlD	b3374	0.39	-0.1
3,501,517	-	frlD	b3374	0.42	-0.3
3,501,522	-	frlD	b3374	0.42	-0.6
3,501,530	+	frlD	b3374	0.43	-0.6
3,501,530	+	frlD	b3374	0.43	-0.4
3,501,530	+	frlD	b3374	0.43	+0.4
3,501,530	+	frlD	b3374	0.43	-0.5
3,501,530	+	frlD	b3374	0.43	-0.7
3,501,536	-	frlD	b3374	0.44	+0.3
3,501,536	-	frlD	b3374	0.44	+0.2
3,501,536	-	frlD	b3374	0.44	-0.4
3,501,538	-	frlD	b3374	0.44	+0.1
3,501,548	-	frlD	b3374	0.46	-0.2
3,501,560	-	frlD	b3374	0.47	+0.1
3,501,801	+	frlD	b3374	0.78	-0.2
3,501,803	+	frlD	b3374	0.78	-0.2
3,501,962	-				-0.2
3,501,964	-				-1.1
3,501,975	+				-0.1
3,501,975	+				+0.0
3,501,980	+				-1.5
3,501,998	-				-0.3
3,501,998	-				+0.2
3,502,109	+				-3.5
3,502,115	-				-1.1
3,502,147	+				-3.5
3,502,157	+	yhfR	b3375	0.11	-3.3
3,502,161	-	yhfR	b3375	0.12	-2.2
3,502,175	-	yhfR	b3375	0.14	-3.1
3,502,205	+	yhfR	b3375	0.18	-2.5
3,502,205	+	yhfR	b3375	0.18	-2.0
3,502,244	-	yhfR	b3375	0.23	+0.1
3,502,244	-	yhfR	b3375	0.23	-4.3
3,502,269	-	yhfR	b3375	0.27	-3.3
3,502,319	-	yhfR	b3375	0.33	-4.2
3,502,326	+	yhfR	b3375	0.34	-4.8
3,502,333	-	yhfR	b3375	0.35	-1.8
3,502,333	-	yhfR	b3375	0.35	-2.6
3,502,337	-	yhfR	b3375	0.36	-2.1
3,502,337	-	yhfR	b3375	0.36	-0.7
3,502,393	+	yhfR	b3375	0.44	-2.9
3,502,401	-	yhfR	b3375	0.45	-1.4
3,502,403	+	yhfR	b3375	0.45	-3.2
3,502,403	+	yhfR	b3375	0.45	-4.3
3,502,403	+	yhfR	b3375	0.45	-3.3
3,502,403	+	yhfR	b3375	0.45	-3.5
3,502,405	-	yhfR	b3375	0.45	-2.9
3,502,411	-	yhfR	b3375	0.46	-2.3
3,502,518	+	yhfR	b3375	0.61	-3.1
3,502,518	-	yhfR	b3375	0.61	-3.4
3,502,518	-	yhfR	b3375	0.61	-1.4
3,502,518	-				-1.4
3,502,529	+	yhfR	b3375	0.62	-3.1
3,502,710	+	yhfR	b3375	0.87	-3.2
3,502,734	+				-2.6
3,502,879	+				-0.1
3,502,884	+				-0.9
3,502,893	-				-0.2
3,502,894	-				-0.0
3,502,894	-				-0.0
3,502,896	+				-0.5
3,502,924	+				-0.2
3,502,924	+				-0.1
3,502,944	+				-0.5
3,502,952	-				-0.6
3,502,957	-				-0.6