Experiment: PreTime0_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yedF and yedK are separated by 108 nucleotides yedK and yedL are separated by 110 nucleotides yedL and yedN are separated by 143 nucleotides
b1930: yedF - hypothetical protein (NCBI), at 2,007,503 to 2,007,736
yedF
b1931: yedK - hypothetical protein (NCBI), at 2,007,845 to 2,008,513
yedK
b1932: yedL - predicted acyltransferase (NCBI), at 2,008,624 to 2,009,103
yedL
b4495: yedN - no description, at 2,009,247 to 2,009,381
yedN
Position (kb)
2008
2009
2010 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2007.627 kb on + strand, within yedF at 2007.628 kb on - strand, within yedF at 2007.630 kb on + strand, within yedF at 2007.656 kb on - strand, within yedF at 2007.710 kb on + strand, within yedF at 2007.744 kb on + strand at 2007.763 kb on - strand at 2007.767 kb on - strand at 2007.775 kb on - strand at 2007.931 kb on + strand, within yedK at 2008.001 kb on - strand, within yedK at 2008.003 kb on + strand, within yedK at 2008.003 kb on + strand, within yedK at 2008.095 kb on + strand, within yedK at 2008.119 kb on - strand, within yedK at 2008.295 kb on - strand, within yedK at 2008.389 kb on + strand, within yedK at 2008.506 kb on + strand at 2008.506 kb on + strand at 2008.534 kb on + strand at 2008.661 kb on - strand at 2008.671 kb on - strand at 2008.696 kb on - strand, within yedL at 2008.707 kb on - strand, within yedL at 2008.707 kb on - strand, within yedL at 2008.728 kb on + strand, within yedL at 2008.729 kb on + strand, within yedL at 2008.767 kb on + strand, within yedL at 2008.767 kb on + strand, within yedL at 2008.777 kb on + strand, within yedL at 2008.777 kb on + strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.785 kb on - strand, within yedL at 2008.899 kb on - strand, within yedL at 2008.899 kb on - strand, within yedL at 2008.921 kb on + strand, within yedL at 2008.921 kb on + strand, within yedL at 2008.921 kb on + strand, within yedL at 2008.926 kb on + strand, within yedL at 2008.926 kb on + strand, within yedL at 2008.929 kb on - strand, within yedL at 2008.929 kb on - strand, within yedL at 2008.950 kb on - strand, within yedL at 2008.958 kb on + strand, within yedL at 2008.981 kb on - strand, within yedL at 2009.019 kb on - strand, within yedL at 2009.102 kb on + strand at 2009.171 kb on + strand at 2009.179 kb on - strand at 2009.184 kb on - strand at 2009.189 kb on + strand at 2009.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PreTime0_1 remove 2,007,627 + yedF b1930 0.53 +0.9 2,007,628 - yedF b1930 0.53 -0.4 2,007,630 + yedF b1930 0.54 +0.3 2,007,656 - yedF b1930 0.65 -0.8 2,007,710 + yedF b1930 0.88 +0.1 2,007,744 + +0.2 2,007,763 - +0.6 2,007,767 - -0.2 2,007,775 - +0.2 2,007,931 + yedK b1931 0.13 +0.5 2,008,001 - yedK b1931 0.23 +0.3 2,008,003 + yedK b1931 0.24 -0.6 2,008,003 + yedK b1931 0.24 +0.2 2,008,095 + yedK b1931 0.37 -0.2 2,008,119 - yedK b1931 0.41 +0.2 2,008,295 - yedK b1931 0.67 -0.6 2,008,389 + yedK b1931 0.81 +0.1 2,008,506 + +0.0 2,008,506 + -0.7 2,008,534 + +0.7 2,008,661 - +1.0 2,008,671 - -1.6 2,008,696 - yedL b1932 0.15 +1.0 2,008,707 - yedL b1932 0.17 -0.5 2,008,707 - yedL b1932 0.17 +0.5 2,008,728 + yedL b1932 0.22 -1.4 2,008,729 + yedL b1932 0.22 -0.1 2,008,767 + yedL b1932 0.30 -1.1 2,008,767 + yedL b1932 0.30 -0.3 2,008,777 + yedL b1932 0.32 -0.1 2,008,777 + yedL b1932 0.32 -1.2 2,008,785 - yedL b1932 0.34 -0.1 2,008,785 - yedL b1932 0.34 -0.7 2,008,785 - yedL b1932 0.34 -0.2 2,008,785 - yedL b1932 0.34 -0.5 2,008,785 - yedL b1932 0.34 +0.3 2,008,785 - yedL b1932 0.34 -1.6 2,008,899 - yedL b1932 0.57 -1.3 2,008,899 - yedL b1932 0.57 +0.3 2,008,921 + yedL b1932 0.62 -0.2 2,008,921 + yedL b1932 0.62 -0.2 2,008,921 + yedL b1932 0.62 -0.6 2,008,926 + yedL b1932 0.63 +0.3 2,008,926 + yedL b1932 0.63 +0.4 2,008,929 - yedL b1932 0.64 -3.1 2,008,929 - yedL b1932 0.64 -0.4 2,008,950 - yedL b1932 0.68 -0.3 2,008,958 + yedL b1932 0.70 -0.2 2,008,981 - yedL b1932 0.74 -1.1 2,009,019 - yedL b1932 0.82 -0.7 2,009,102 + +0.4 2,009,171 + +1.3 2,009,179 - +1.3 2,009,184 - -0.7 2,009,189 + +1.3 2,009,794 + -0.7
Or see this region's nucleotide sequence