Experiment: PreTime0_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgE and flgF are separated by 19 nucleotides flgF and flgG are separated by 171 nucleotides
b1076: flgE - flagellar hook protein E (NCBI), at 1,131,797 to 1,133,005
flgE
b1077: flgF - flagellar component of cell-proximal portion of basal-body rod (NCBI), at 1,133,025 to 1,133,780
flgF
b1078: flgG - flagellar component of cell-distal portion of basal-body rod (NCBI), at 1,133,952 to 1,134,734
flgG
Position (kb)
1133
1134 Strain fitness (log2 ratio)
-1
0
1 at 1132.176 kb on - strand, within flgE at 1132.283 kb on - strand, within flgE at 1132.366 kb on + strand, within flgE at 1132.366 kb on + strand, within flgE at 1132.384 kb on + strand, within flgE at 1132.423 kb on + strand, within flgE at 1132.463 kb on - strand, within flgE at 1132.463 kb on - strand, within flgE at 1132.510 kb on - strand, within flgE at 1132.551 kb on + strand, within flgE at 1132.559 kb on - strand, within flgE at 1132.559 kb on - strand, within flgE at 1132.574 kb on - strand, within flgE at 1132.584 kb on - strand, within flgE at 1132.605 kb on - strand, within flgE at 1132.625 kb on - strand, within flgE at 1132.625 kb on - strand, within flgE at 1132.694 kb on - strand, within flgE at 1132.979 kb on - strand at 1132.986 kb on - strand at 1132.998 kb on - strand at 1132.998 kb on - strand at 1133.002 kb on + strand at 1133.037 kb on + strand at 1133.162 kb on - strand, within flgF at 1133.162 kb on - strand, within flgF at 1133.215 kb on - strand, within flgF at 1133.251 kb on - strand, within flgF at 1133.251 kb on - strand, within flgF at 1133.286 kb on - strand, within flgF at 1133.318 kb on - strand, within flgF at 1133.324 kb on - strand, within flgF at 1133.336 kb on + strand, within flgF at 1133.367 kb on + strand, within flgF at 1133.389 kb on - strand, within flgF at 1133.417 kb on - strand, within flgF at 1133.467 kb on - strand, within flgF at 1133.477 kb on + strand, within flgF at 1133.610 kb on + strand, within flgF at 1133.618 kb on - strand, within flgF at 1133.833 kb on + strand at 1134.108 kb on + strand, within flgG at 1134.162 kb on + strand, within flgG at 1134.296 kb on - strand, within flgG at 1134.296 kb on - strand, within flgG at 1134.315 kb on - strand, within flgG at 1134.343 kb on - strand, within flgG at 1134.375 kb on + strand, within flgG at 1134.375 kb on + strand, within flgG at 1134.387 kb on + strand, within flgG at 1134.387 kb on + strand, within flgG at 1134.424 kb on + strand, within flgG at 1134.424 kb on + strand, within flgG at 1134.432 kb on - strand, within flgG at 1134.598 kb on - strand, within flgG at 1134.598 kb on - strand, within flgG at 1134.700 kb on - strand at 1134.752 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PreTime0_1 remove 1,132,176 - flgE b1076 0.31 +0.3 1,132,283 - flgE b1076 0.40 -0.1 1,132,366 + flgE b1076 0.47 +0.9 1,132,366 + flgE b1076 0.47 +0.2 1,132,384 + flgE b1076 0.49 +0.0 1,132,423 + flgE b1076 0.52 -0.5 1,132,463 - flgE b1076 0.55 -0.5 1,132,463 - flgE b1076 0.55 -0.0 1,132,510 - flgE b1076 0.59 -0.2 1,132,551 + flgE b1076 0.62 -0.3 1,132,559 - flgE b1076 0.63 +0.2 1,132,559 - flgE b1076 0.63 +0.1 1,132,574 - flgE b1076 0.64 +0.3 1,132,584 - flgE b1076 0.65 -0.2 1,132,605 - flgE b1076 0.67 -0.8 1,132,625 - flgE b1076 0.68 -1.3 1,132,625 - flgE b1076 0.68 -0.6 1,132,694 - flgE b1076 0.74 -0.2 1,132,979 - -0.8 1,132,986 - +0.7 1,132,998 - -0.9 1,132,998 - +0.3 1,133,002 + +0.2 1,133,037 + +0.8 1,133,162 - flgF b1077 0.18 -1.7 1,133,162 - flgF b1077 0.18 +0.4 1,133,215 - flgF b1077 0.25 -0.1 1,133,251 - flgF b1077 0.30 -0.8 1,133,251 - flgF b1077 0.30 -0.4 1,133,286 - flgF b1077 0.35 -0.2 1,133,318 - flgF b1077 0.39 -1.0 1,133,324 - flgF b1077 0.40 -0.3 1,133,336 + flgF b1077 0.41 +0.2 1,133,367 + flgF b1077 0.45 -1.2 1,133,389 - flgF b1077 0.48 -0.5 1,133,417 - flgF b1077 0.52 +0.1 1,133,467 - flgF b1077 0.58 -0.2 1,133,477 + flgF b1077 0.60 -0.1 1,133,610 + flgF b1077 0.77 -0.5 1,133,618 - flgF b1077 0.78 +0.5 1,133,833 + -0.5 1,134,108 + flgG b1078 0.20 +0.2 1,134,162 + flgG b1078 0.27 -0.1 1,134,296 - flgG b1078 0.44 +1.2 1,134,296 - flgG b1078 0.44 +0.3 1,134,315 - flgG b1078 0.46 -0.1 1,134,343 - flgG b1078 0.50 -0.1 1,134,375 + flgG b1078 0.54 +0.4 1,134,375 + flgG b1078 0.54 +0.4 1,134,387 + flgG b1078 0.56 -0.0 1,134,387 + flgG b1078 0.56 -1.0 1,134,424 + flgG b1078 0.60 -0.1 1,134,424 + flgG b1078 0.60 -1.0 1,134,432 - flgG b1078 0.61 -1.0 1,134,598 - flgG b1078 0.83 +0.5 1,134,598 - flgG b1078 0.83 +0.4 1,134,700 - -0.5 1,134,752 + +0.1
Or see this region's nucleotide sequence