Strain Fitness in Escherichia coli BW25113 around b2114

Experiment: PreTime0_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmrp and metG are separated by 131 nucleotidesmetG and yehH are separated by 140 nucleotides b2113: mrp - putative ATPase (VIMSS), at 2,191,081 to 2,192,190 mrp b2114: metG - methionyl-tRNA synthetase (NCBI), at 2,192,322 to 2,194,355 metG b4499: yehH - no description, at 2,194,496 to 2,198,291 yehH Position (kb) 2192 2193 2194 2195Strain fitness (log2 ratio) -2 -1 0 1at 2191.329 kb on + strand, within mrpat 2191.329 kb on + strand, within mrpat 2191.334 kb on + strand, within mrpat 2191.345 kb on + strand, within mrpat 2191.450 kb on + strand, within mrpat 2191.689 kb on - strand, within mrpat 2191.689 kb on - strand, within mrpat 2191.755 kb on - strand, within mrpat 2191.810 kb on + strand, within mrpat 2191.923 kb on - strandat 2191.961 kb on + strand, within mrpat 2191.989 kb on - strand, within mrpat 2192.094 kb on + strandat 2192.094 kb on + strandat 2192.201 kb on + strandat 2192.251 kb on - strandat 2193.943 kb on + strand, within metGat 2193.943 kb on + strand, within metGat 2194.315 kb on + strandat 2194.456 kb on - strandat 2194.456 kb on - strandat 2194.694 kb on - strandat 2194.694 kb on - strandat 2194.748 kb on + strandat 2194.827 kb on + strandat 2194.875 kb on + strandat 2194.875 kb on + strandat 2194.875 kb on + strandat 2194.885 kb on + strand, within yehHat 2194.890 kb on + strand, within yehHat 2194.955 kb on + strand, within yehHat 2194.955 kb on + strand, within yehHat 2194.960 kb on + strand, within yehHat 2194.960 kb on + strand, within yehHat 2194.960 kb on + strand, within yehHat 2194.963 kb on - strand, within yehHat 2194.963 kb on - strand, within yehHat 2194.968 kb on + strand, within yehHat 2194.968 kb on + strand, within yehHat 2195.047 kb on + strand, within yehHat 2195.047 kb on + strand, within yehHat 2195.059 kb on + strand, within yehHat 2195.073 kb on + strand, within yehHat 2195.078 kb on + strand, within yehHat 2195.083 kb on + strand, within yehHat 2195.095 kb on + strand, within yehHat 2195.099 kb on - strand, within yehHat 2195.100 kb on + strand, within yehHat 2195.102 kb on + strand, within yehHat 2195.102 kb on + strand, within yehHat 2195.136 kb on + strand, within yehHat 2195.136 kb on + strand, within yehHat 2195.151 kb on + strand, within yehHat 2195.156 kb on + strand, within yehHat 2195.156 kb on + strand, within yehHat 2195.161 kb on + strand, within yehHat 2195.164 kb on - strand, within yehHat 2195.165 kb on - strand, within yehHat 2195.184 kb on + strand, within yehHat 2195.201 kb on + strand, within yehHat 2195.239 kb on + strand, within yehHat 2195.239 kb on + strand, within yehHat 2195.287 kb on + strand, within yehHat 2195.295 kb on - strand, within yehHat 2195.334 kb on - strand, within yehH

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Per-strain Table

Position Strand Gene LocusTag Fraction PreTime0_1
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2,191,329 + mrp b2113 0.22 -0.1
2,191,329 + mrp b2113 0.22 +0.2
2,191,334 + mrp b2113 0.23 +0.6
2,191,345 + mrp b2113 0.24 +0.2
2,191,450 + mrp b2113 0.33 +0.4
2,191,689 - mrp b2113 0.55 +0.4
2,191,689 - mrp b2113 0.55 -0.6
2,191,755 - mrp b2113 0.61 +0.0
2,191,810 + mrp b2113 0.66 -0.1
2,191,923 - +0.3
2,191,961 + mrp b2113 0.79 +0.8
2,191,989 - mrp b2113 0.82 +0.7
2,192,094 + -1.3
2,192,094 + +1.1
2,192,201 + -0.3
2,192,251 - -0.9
2,193,943 + metG b2114 0.80 +0.3
2,193,943 + metG b2114 0.80 -0.7
2,194,315 + +0.2
2,194,456 - -1.1
2,194,456 - +0.8
2,194,694 - +1.5
2,194,694 - -0.1
2,194,748 + -0.4
2,194,827 + +1.0
2,194,875 + +0.2
2,194,875 + -0.1
2,194,875 + +0.5
2,194,885 + yehH b4499 0.10 +0.2
2,194,890 + yehH b4499 0.10 -0.0
2,194,955 + yehH b4499 0.12 -2.0
2,194,955 + yehH b4499 0.12 -2.0
2,194,960 + yehH b4499 0.12 -0.7
2,194,960 + yehH b4499 0.12 +0.1
2,194,960 + yehH b4499 0.12 -0.0
2,194,963 - yehH b4499 0.12 -1.7
2,194,963 - yehH b4499 0.12 -0.3
2,194,968 + yehH b4499 0.12 -0.9
2,194,968 + yehH b4499 0.12 +0.3
2,195,047 + yehH b4499 0.15 +0.7
2,195,047 + yehH b4499 0.15 +0.5
2,195,059 + yehH b4499 0.15 -0.1
2,195,073 + yehH b4499 0.15 +0.4
2,195,078 + yehH b4499 0.15 -0.5
2,195,083 + yehH b4499 0.15 -0.9
2,195,095 + yehH b4499 0.16 -0.8
2,195,099 - yehH b4499 0.16 -1.5
2,195,100 + yehH b4499 0.16 +0.3
2,195,102 + yehH b4499 0.16 +0.2
2,195,102 + yehH b4499 0.16 +0.1
2,195,136 + yehH b4499 0.17 +0.6
2,195,136 + yehH b4499 0.17 -0.3
2,195,151 + yehH b4499 0.17 +0.1
2,195,156 + yehH b4499 0.17 -0.6
2,195,156 + yehH b4499 0.17 +0.7
2,195,161 + yehH b4499 0.18 +0.1
2,195,164 - yehH b4499 0.18 +1.5
2,195,165 - yehH b4499 0.18 -0.3
2,195,184 + yehH b4499 0.18 -0.3
2,195,201 + yehH b4499 0.19 +0.8
2,195,239 + yehH b4499 0.20 -0.1
2,195,239 + yehH b4499 0.20 -0.0
2,195,287 + yehH b4499 0.21 +0.5
2,195,295 - yehH b4499 0.21 +1.5
2,195,334 - yehH b4499 0.22 +1.5

Or see this region's nucleotide sequence