Strain Fitness in Escherichia coli BW25113 around b4278

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjgZ and insG are separated by 513 nucleotidesinsG and yjhB are separated by 626 nucleotides b4277: yjgZ - KpLE2 phage-like element; predicted protein (NCBI), at 4,499,283 to 4,499,612 yjgZ b4278: insG - KpLE2 phage-like element; IS4 predicted transposase (NCBI), at 4,500,126 to 4,501,454 insG b4279: yjhB - putative transport protein (VIMSS), at 4,502,081 to 4,503,298 yjhB Position (kb) 4500 4501 4502Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4499.230 kb on + strandat 4499.238 kb on - strandat 4499.279 kb on - strandat 4499.290 kb on + strandat 4499.290 kb on + strandat 4499.309 kb on - strandat 4499.385 kb on - strand, within yjgZat 4499.387 kb on + strand, within yjgZat 4499.408 kb on - strand, within yjgZat 4499.451 kb on + strand, within yjgZat 4499.466 kb on - strand, within yjgZat 4499.486 kb on - strand, within yjgZat 4499.503 kb on + strand, within yjgZat 4499.552 kb on - strand, within yjgZat 4499.584 kb on - strandat 4499.612 kb on + strandat 4499.612 kb on + strandat 4499.641 kb on - strandat 4499.721 kb on - strandat 4499.735 kb on - strandat 4499.735 kb on - strandat 4499.752 kb on - strandat 4499.752 kb on - strandat 4499.770 kb on + strandat 4499.770 kb on + strandat 4499.783 kb on + strandat 4499.793 kb on + strandat 4499.799 kb on + strandat 4499.834 kb on + strandat 4499.834 kb on + strandat 4499.845 kb on + strandat 4499.845 kb on + strandat 4499.901 kb on + strandat 4499.901 kb on + strandat 4499.906 kb on + strandat 4499.948 kb on - strandat 4499.948 kb on - strandat 4499.954 kb on + strandat 4499.980 kb on - strandat 4499.999 kb on + strandat 4499.999 kb on + strandat 4500.007 kb on - strandat 4500.055 kb on - strandat 4500.084 kb on + strandat 4500.174 kb on - strandat 4500.185 kb on - strandat 4500.196 kb on - strandat 4500.196 kb on - strandat 4500.309 kb on + strand, within insGat 4500.464 kb on + strand, within insGat 4500.477 kb on - strand, within insGat 4500.480 kb on - strand, within insGat 4500.524 kb on + strand, within insGat 4500.529 kb on + strand, within insGat 4500.532 kb on + strand, within insGat 4500.534 kb on + strand, within insGat 4500.540 kb on - strand, within insGat 4500.637 kb on + strand, within insGat 4500.637 kb on + strand, within insGat 4500.796 kb on - strand, within insGat 4500.804 kb on - strand, within insGat 4500.814 kb on - strand, within insGat 4500.814 kb on - strand, within insGat 4500.937 kb on - strand, within insGat 4500.995 kb on + strand, within insGat 4500.995 kb on + strand, within insGat 4501.021 kb on - strand, within insGat 4501.021 kb on - strand, within insGat 4501.052 kb on - strand, within insGat 4501.062 kb on + strand, within insGat 4501.108 kb on + strand, within insGat 4501.263 kb on - strand, within insGat 4501.263 kb on - strand, within insGat 4501.275 kb on + strand, within insGat 4501.287 kb on - strand, within insGat 4501.432 kb on + strandat 4501.432 kb on + strandat 4501.498 kb on + strandat 4501.759 kb on + strandat 4501.759 kb on + strandat 4501.768 kb on + strandat 4501.768 kb on + strandat 4501.778 kb on + strandat 4501.778 kb on + strandat 4501.778 kb on + strandat 4501.799 kb on + strandat 4501.799 kb on + strandat 4501.821 kb on + strandat 4501.821 kb on + strandat 4501.821 kb on + strandat 4501.821 kb on + strandat 4501.821 kb on + strandat 4501.823 kb on + strandat 4501.826 kb on + strandat 4501.837 kb on + strandat 4501.875 kb on + strandat 4501.875 kb on + strandat 4501.887 kb on + strandat 4501.906 kb on + strandat 4501.914 kb on + strandat 4501.918 kb on + strandat 4501.918 kb on + strandat 4501.956 kb on + strandat 4501.956 kb on + strandat 4501.957 kb on + strandat 4501.957 kb on + strandat 4501.971 kb on + strandat 4501.974 kb on + strandat 4501.981 kb on + strandat 4502.265 kb on - strand, within yjhBat 4502.276 kb on - strand, within yjhBat 4502.363 kb on + strand, within yjhB

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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4,499,230 + +0.7
4,499,238 - -0.5
4,499,279 - -0.4
4,499,290 + -1.9
4,499,290 + -2.4
4,499,309 - -1.5
4,499,385 - yjgZ b4277 0.31 +0.3
4,499,387 + yjgZ b4277 0.32 +0.3
4,499,408 - yjgZ b4277 0.38 +0.9
4,499,451 + yjgZ b4277 0.51 +0.3
4,499,466 - yjgZ b4277 0.55 -0.2
4,499,486 - yjgZ b4277 0.62 +0.6
4,499,503 + yjgZ b4277 0.67 +0.4
4,499,552 - yjgZ b4277 0.82 +0.5
4,499,584 - -1.1
4,499,612 + -0.6
4,499,612 + +1.0
4,499,641 - -0.7
4,499,721 - -0.3
4,499,735 - +0.4
4,499,735 - +1.4
4,499,752 - +0.6
4,499,752 - +1.0
4,499,770 + -0.5
4,499,770 + +0.4
4,499,783 + +0.6
4,499,793 + -3.9
4,499,799 + -3.9
4,499,834 + +1.4
4,499,834 + +1.0
4,499,845 + +0.9
4,499,845 + +0.2
4,499,901 + +1.6
4,499,901 + +0.8
4,499,906 + +0.3
4,499,948 - -2.3
4,499,948 - -0.9
4,499,954 + +0.7
4,499,980 - -0.9
4,499,999 + +0.8
4,499,999 + +0.4
4,500,007 - -4.1
4,500,055 - -0.0
4,500,084 + -0.9
4,500,174 - +0.2
4,500,185 - +0.8
4,500,196 - +0.6
4,500,196 - +0.9
4,500,309 + insG b4278 0.14 +0.2
4,500,464 + insG b4278 0.25 +0.3
4,500,477 - insG b4278 0.26 +0.4
4,500,480 - insG b4278 0.27 -1.3
4,500,524 + insG b4278 0.30 +0.3
4,500,529 + insG b4278 0.30 +0.8
4,500,532 + insG b4278 0.31 -0.4
4,500,534 + insG b4278 0.31 -1.4
4,500,540 - insG b4278 0.31 -1.6
4,500,637 + insG b4278 0.38 -3.3
4,500,637 + insG b4278 0.38 -0.9
4,500,796 - insG b4278 0.50 +0.8
4,500,804 - insG b4278 0.51 +0.2
4,500,814 - insG b4278 0.52 -0.4
4,500,814 - insG b4278 0.52 -0.3
4,500,937 - insG b4278 0.61 -0.4
4,500,995 + insG b4278 0.65 -1.7
4,500,995 + insG b4278 0.65 +0.4
4,501,021 - insG b4278 0.67 +1.8
4,501,021 - insG b4278 0.67 +0.0
4,501,052 - insG b4278 0.70 -0.7
4,501,062 + insG b4278 0.70 -0.7
4,501,108 + insG b4278 0.74 -0.5
4,501,263 - insG b4278 0.86 -0.4
4,501,263 - insG b4278 0.86 +0.1
4,501,275 + insG b4278 0.86 -1.2
4,501,287 - insG b4278 0.87 -0.9
4,501,432 + +0.7
4,501,432 + -0.8
4,501,498 + -0.1
4,501,759 + -0.4
4,501,759 + -0.0
4,501,768 + +0.4
4,501,768 + +0.4
4,501,778 + +1.7
4,501,778 + +0.9
4,501,778 + +0.5
4,501,799 + +0.7
4,501,799 + -0.5
4,501,821 + -1.4
4,501,821 + -2.3
4,501,821 + +0.1
4,501,821 + +1.5
4,501,821 + +0.8
4,501,823 + +0.6
4,501,826 + +0.0
4,501,837 + -1.1
4,501,875 + -1.2
4,501,875 + -2.7
4,501,887 + -1.0
4,501,906 + -0.3
4,501,914 + +0.7
4,501,918 + +1.9
4,501,918 + -0.8
4,501,956 + -1.2
4,501,956 + -0.0
4,501,957 + -0.2
4,501,957 + -2.7
4,501,971 + -1.7
4,501,974 + -1.1
4,501,981 + -2.7
4,502,265 - yjhB b4279 0.15 +2.3
4,502,276 - yjhB b4279 0.16 +2.3
4,502,363 + yjhB b4279 0.23 +2.3

Or see this region's nucleotide sequence