Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt chiA and tufA are separated by 291 nucleotides tufA and fusA are separated by 70 nucleotides
b3338: chiA - periplasmic endochitinase (NCBI), at 3,465,182 to 3,467,875
chiA
b3339: tufA - protein chain elongation factor EF-Tu (duplicate of tufB) (NCBI), at 3,468,167 to 3,469,351
tufA
b3340: fusA - elongation factor EF-2 (NCBI), at 3,469,422 to 3,471,536
fusA
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3467.168 kb on + strand, within chiA at 3467.188 kb on + strand, within chiA at 3467.191 kb on + strand, within chiA at 3467.196 kb on - strand, within chiA at 3467.198 kb on - strand, within chiA at 3467.206 kb on - strand, within chiA at 3467.206 kb on - strand, within chiA at 3467.239 kb on - strand, within chiA at 3467.287 kb on + strand, within chiA at 3467.287 kb on + strand, within chiA at 3467.347 kb on + strand, within chiA at 3467.350 kb on - strand, within chiA at 3467.350 kb on - strand, within chiA at 3467.374 kb on - strand, within chiA at 3467.389 kb on + strand, within chiA at 3467.397 kb on + strand, within chiA at 3467.397 kb on - strand, within chiA at 3467.398 kb on + strand, within chiA at 3467.398 kb on + strand, within chiA at 3467.403 kb on + strand, within chiA at 3467.406 kb on - strand, within chiA at 3467.406 kb on - strand, within chiA at 3467.407 kb on - strand, within chiA at 3467.407 kb on - strand, within chiA at 3467.407 kb on - strand, within chiA at 3467.407 kb on - strand, within chiA at 3467.408 kb on - strand, within chiA at 3467.417 kb on - strand, within chiA at 3467.417 kb on - strand, within chiA at 3467.426 kb on + strand, within chiA at 3467.426 kb on + strand, within chiA at 3467.426 kb on + strand, within chiA at 3467.434 kb on + strand, within chiA at 3467.434 kb on - strand, within chiA at 3467.444 kb on + strand, within chiA at 3467.451 kb on + strand, within chiA at 3467.451 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.454 kb on + strand, within chiA at 3467.462 kb on - strand, within chiA at 3467.467 kb on - strand, within chiA at 3467.468 kb on + strand, within chiA at 3467.476 kb on + strand, within chiA at 3467.476 kb on + strand, within chiA at 3467.483 kb on - strand, within chiA at 3467.483 kb on - strand, within chiA at 3467.491 kb on + strand, within chiA at 3467.491 kb on + strand, within chiA at 3467.491 kb on - strand, within chiA at 3467.491 kb on - strand, within chiA at 3467.499 kb on - strand, within chiA at 3467.509 kb on + strand, within chiA at 3467.509 kb on + strand, within chiA at 3467.509 kb on + strand, within chiA at 3467.509 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.511 kb on + strand, within chiA at 3467.514 kb on + strand, within chiA at 3467.516 kb on + strand, within chiA at 3467.516 kb on + strand, within chiA at 3467.516 kb on + strand, within chiA at 3467.516 kb on + strand, within chiA at 3467.517 kb on - strand, within chiA at 3467.519 kb on + strand, within chiA at 3467.519 kb on + strand, within chiA at 3467.519 kb on - strand, within chiA at 3467.519 kb on - strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.521 kb on + strand, within chiA at 3467.522 kb on - strand, within chiA at 3467.522 kb on - strand, within chiA at 3467.522 kb on - strand, within chiA at 3467.524 kb on - strand, within chiA at 3467.524 kb on - strand, within chiA at 3467.526 kb on + strand, within chiA at 3467.526 kb on + strand, within chiA at 3467.526 kb on + strand, within chiA at 3467.527 kb on + strand, within chiA at 3467.527 kb on + strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.529 kb on - strand, within chiA at 3467.534 kb on - strand, within chiA at 3467.534 kb on - strand, within chiA at 3467.535 kb on - strand, within chiA at 3467.536 kb on + strand, within chiA at 3467.540 kb on + strand, within chiA at 3467.541 kb on + strand, within chiA at 3467.553 kb on + strand, within chiA at 3467.558 kb on + strand, within chiA at 3467.580 kb on + strand, within chiA at 3467.586 kb on + strand, within chiA at 3467.589 kb on + strand, within chiA at 3467.644 kb on + strand at 3467.646 kb on + strand at 3467.646 kb on + strand at 3467.651 kb on - strand at 3467.654 kb on - strand at 3467.656 kb on + strand at 3467.656 kb on + strand at 3467.656 kb on + strand at 3467.656 kb on + strand at 3467.656 kb on + strand at 3467.657 kb on + strand at 3467.657 kb on + strand at 3467.657 kb on + strand at 3467.659 kb on + strand at 3467.659 kb on + strand at 3467.669 kb on + strand at 3467.670 kb on + strand at 3467.671 kb on + strand at 3467.671 kb on + strand at 3467.676 kb on + strand at 3467.680 kb on + strand at 3467.693 kb on + strand at 3467.693 kb on + strand at 3467.780 kb on + strand at 3467.785 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.823 kb on + strand at 3467.827 kb on + strand at 3467.831 kb on - strand at 3467.833 kb on + strand at 3467.833 kb on + strand at 3467.833 kb on + strand at 3467.833 kb on + strand at 3467.833 kb on + strand at 3467.833 kb on + strand at 3467.833 kb on + strand at 3467.844 kb on + strand at 3467.890 kb on - strand at 3468.091 kb on - strand at 3468.095 kb on - strand at 3468.095 kb on - strand at 3468.105 kb on - strand at 3468.132 kb on - strand at 3468.132 kb on - strand at 3468.137 kb on - strand at 3468.168 kb on - strand at 3468.168 kb on - strand at 3469.374 kb on - strand at 3469.376 kb on - strand at 3469.376 kb on - strand at 3469.389 kb on - strand at 3469.420 kb on - strand at 3469.432 kb on - strand at 3469.432 kb on - strand at 3469.444 kb on - strand at 3469.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction mzaABCDE remove 3,467,168 + chiA b3338 0.74 -0.3 3,467,188 + chiA b3338 0.74 +0.2 3,467,191 + chiA b3338 0.75 -0.3 3,467,196 - chiA b3338 0.75 +0.9 3,467,198 - chiA b3338 0.75 +0.0 3,467,206 - chiA b3338 0.75 +1.5 3,467,206 - chiA b3338 0.75 -1.4 3,467,239 - chiA b3338 0.76 -0.5 3,467,287 + chiA b3338 0.78 +2.3 3,467,287 + chiA b3338 0.78 -0.5 3,467,347 + chiA b3338 0.80 +0.6 3,467,350 - chiA b3338 0.80 +2.0 3,467,350 - chiA b3338 0.80 +0.7 3,467,374 - chiA b3338 0.81 -1.9 3,467,389 + chiA b3338 0.82 +1.0 3,467,397 + chiA b3338 0.82 -1.1 3,467,397 - chiA b3338 0.82 -1.9 3,467,398 + chiA b3338 0.82 +0.2 3,467,398 + chiA b3338 0.82 +0.9 3,467,403 + chiA b3338 0.82 -1.2 3,467,406 - chiA b3338 0.83 +1.9 3,467,406 - chiA b3338 0.83 -0.4 3,467,407 - chiA b3338 0.83 -1.4 3,467,407 - chiA b3338 0.83 -2.0 3,467,407 - chiA b3338 0.83 +0.8 3,467,407 - chiA b3338 0.83 -2.9 3,467,408 - chiA b3338 0.83 -0.0 3,467,417 - chiA b3338 0.83 +1.6 3,467,417 - chiA b3338 0.83 +1.7 3,467,426 + chiA b3338 0.83 +1.7 3,467,426 + chiA b3338 0.83 +1.6 3,467,426 + chiA b3338 0.83 -0.4 3,467,434 + chiA b3338 0.84 +0.2 3,467,434 - chiA b3338 0.84 +1.1 3,467,444 + chiA b3338 0.84 +0.5 3,467,451 + chiA b3338 0.84 +0.8 3,467,451 + chiA b3338 0.84 -0.3 3,467,454 + chiA b3338 0.84 -0.9 3,467,454 + chiA b3338 0.84 +0.9 3,467,454 + chiA b3338 0.84 +0.7 3,467,454 + chiA b3338 0.84 +1.2 3,467,454 + chiA b3338 0.84 +1.0 3,467,454 + chiA b3338 0.84 +0.2 3,467,454 + chiA b3338 0.84 +1.4 3,467,454 + chiA b3338 0.84 -1.7 3,467,454 + chiA b3338 0.84 -0.2 3,467,454 + chiA b3338 0.84 +0.5 3,467,454 + chiA b3338 0.84 -3.4 3,467,454 + chiA b3338 0.84 +0.7 3,467,454 + chiA b3338 0.84 -3.7 3,467,462 - chiA b3338 0.85 +0.2 3,467,467 - chiA b3338 0.85 -0.1 3,467,468 + chiA b3338 0.85 +0.5 3,467,476 + chiA b3338 0.85 -0.2 3,467,476 + chiA b3338 0.85 -1.7 3,467,483 - chiA b3338 0.85 +1.0 3,467,483 - chiA b3338 0.85 +1.3 3,467,491 + chiA b3338 0.86 -2.8 3,467,491 + chiA b3338 0.86 +0.4 3,467,491 - chiA b3338 0.86 +1.8 3,467,491 - chiA b3338 0.86 +1.2 3,467,499 - chiA b3338 0.86 +0.3 3,467,509 + chiA b3338 0.86 -0.9 3,467,509 + chiA b3338 0.86 -3.3 3,467,509 + chiA b3338 0.86 +0.6 3,467,509 + chiA b3338 0.86 -0.2 3,467,511 + chiA b3338 0.86 +0.2 3,467,511 + chiA b3338 0.86 +0.5 3,467,511 + chiA b3338 0.86 +2.4 3,467,511 + chiA b3338 0.86 +1.6 3,467,511 + chiA b3338 0.86 -0.5 3,467,511 + chiA b3338 0.86 -2.9 3,467,511 + chiA b3338 0.86 -0.5 3,467,511 + chiA b3338 0.86 -1.9 3,467,514 + chiA b3338 0.87 -0.6 3,467,516 + chiA b3338 0.87 +1.4 3,467,516 + chiA b3338 0.87 -4.0 3,467,516 + chiA b3338 0.87 +1.1 3,467,516 + chiA b3338 0.87 -0.4 3,467,517 - chiA b3338 0.87 -2.4 3,467,519 + chiA b3338 0.87 +0.3 3,467,519 + chiA b3338 0.87 -0.2 3,467,519 - chiA b3338 0.87 -1.6 3,467,519 - chiA b3338 0.87 -0.9 3,467,521 + chiA b3338 0.87 -0.8 3,467,521 + chiA b3338 0.87 +0.9 3,467,521 + chiA b3338 0.87 -1.4 3,467,521 + chiA b3338 0.87 -0.6 3,467,521 + chiA b3338 0.87 +0.8 3,467,521 + chiA b3338 0.87 -0.7 3,467,521 + chiA b3338 0.87 -3.7 3,467,521 + chiA b3338 0.87 -0.8 3,467,521 + chiA b3338 0.87 -0.8 3,467,521 + chiA b3338 0.87 +1.2 3,467,521 + chiA b3338 0.87 -1.9 3,467,522 - chiA b3338 0.87 -0.3 3,467,522 - chiA b3338 0.87 +1.1 3,467,522 - chiA b3338 0.87 +0.7 3,467,524 - chiA b3338 0.87 -1.8 3,467,524 - chiA b3338 0.87 +1.9 3,467,526 + chiA b3338 0.87 -0.1 3,467,526 + chiA b3338 0.87 +3.3 3,467,526 + chiA b3338 0.87 +0.9 3,467,527 + chiA b3338 0.87 +0.3 3,467,527 + chiA b3338 0.87 +0.8 3,467,529 - chiA b3338 0.87 -1.8 3,467,529 - chiA b3338 0.87 +0.9 3,467,529 - chiA b3338 0.87 -0.5 3,467,529 - chiA b3338 0.87 -0.7 3,467,529 - chiA b3338 0.87 +1.3 3,467,529 - chiA b3338 0.87 +0.7 3,467,529 - chiA b3338 0.87 +0.7 3,467,534 - chiA b3338 0.87 -0.5 3,467,534 - chiA b3338 0.87 -0.5 3,467,535 - chiA b3338 0.87 -1.4 3,467,536 + chiA b3338 0.87 -0.6 3,467,540 + chiA b3338 0.88 +1.0 3,467,541 + chiA b3338 0.88 -1.2 3,467,553 + chiA b3338 0.88 +1.8 3,467,558 + chiA b3338 0.88 -0.0 3,467,580 + chiA b3338 0.89 +0.2 3,467,586 + chiA b3338 0.89 -0.2 3,467,589 + chiA b3338 0.89 -3.7 3,467,644 + +1.3 3,467,646 + -2.9 3,467,646 + +1.9 3,467,651 - -0.9 3,467,654 - +2.3 3,467,656 + -0.1 3,467,656 + -0.1 3,467,656 + +0.5 3,467,656 + +0.0 3,467,656 + -1.0 3,467,657 + -0.5 3,467,657 + -2.8 3,467,657 + -0.2 3,467,659 + -3.3 3,467,659 + +0.9 3,467,669 + -1.3 3,467,670 + +1.2 3,467,671 + -1.6 3,467,671 + +1.6 3,467,676 + -0.0 3,467,680 + +2.4 3,467,693 + -3.0 3,467,693 + +2.7 3,467,780 + -0.8 3,467,785 + +3.9 3,467,823 + +0.6 3,467,823 + +0.7 3,467,823 + +1.2 3,467,823 + +0.7 3,467,823 + +1.7 3,467,823 + +2.3 3,467,823 + -0.5 3,467,823 + -0.9 3,467,823 + -0.0 3,467,823 + -0.9 3,467,823 + -0.1 3,467,827 + +0.7 3,467,831 - +2.3 3,467,833 + +2.1 3,467,833 + -0.0 3,467,833 + -0.6 3,467,833 + -2.5 3,467,833 + +2.1 3,467,833 + +0.2 3,467,833 + -0.6 3,467,844 + -1.0 3,467,890 - +1.6 3,468,091 - -1.9 3,468,095 - +0.4 3,468,095 - -0.7 3,468,105 - -2.4 3,468,132 - -0.2 3,468,132 - +0.2 3,468,137 - -0.5 3,468,168 - +1.3 3,468,168 - +0.3 3,469,374 - -1.0 3,469,376 - -0.7 3,469,376 - -0.7 3,469,389 - -2.9 3,469,420 - +0.6 3,469,432 - +0.8 3,469,432 - -2.9 3,469,444 - -0.6 3,469,454 - +2.3
Or see this region's nucleotide sequence