Strain Fitness in Escherichia coli BW25113 around b2733
Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | mzaABCDE |
---|---|---|---|---|---|
remove | |||||
2,854,115 | + | fhlA | b2731 | 0.84 | -0.7 |
2,854,129 | - | fhlA | b2731 | 0.85 | +0.5 |
2,854,131 | + | fhlA | b2731 | 0.85 | -0.2 |
2,854,192 | - | fhlA | b2731 | 0.88 | -1.0 |
2,854,260 | + | +1.1 | |||
2,854,282 | - | -0.6 | |||
2,854,529 | - | ygbA | b2732 | 0.15 | -0.9 |
2,854,552 | + | ygbA | b2732 | 0.22 | +0.5 |
2,854,586 | - | ygbA | b2732 | 0.31 | -1.3 |
2,854,622 | - | ygbA | b2732 | 0.42 | +0.5 |
2,854,652 | - | ygbA | b2732 | 0.50 | +1.0 |
2,854,652 | - | ygbA | b2732 | 0.50 | -0.1 |
2,854,984 | + | -2.0 | |||
2,854,984 | + | +0.4 | |||
2,855,167 | - | +1.6 | |||
2,855,314 | + | +0.0 | |||
2,855,314 | + | +0.6 | |||
2,855,723 | - | mutS | b2733 | 0.24 | +0.2 |
2,855,747 | + | mutS | b2733 | 0.25 | +1.2 |
2,855,821 | - | mutS | b2733 | 0.28 | +1.4 |
2,855,821 | - | mutS | b2733 | 0.28 | +1.8 |
2,855,858 | + | mutS | b2733 | 0.29 | -3.7 |
2,856,007 | - | mutS | b2733 | 0.35 | -0.8 |
2,856,077 | + | mutS | b2733 | 0.38 | -0.1 |
2,856,077 | + | mutS | b2733 | 0.38 | -0.2 |
2,856,135 | + | mutS | b2733 | 0.40 | +0.9 |
2,856,135 | + | mutS | b2733 | 0.40 | -0.8 |
2,856,226 | + | mutS | b2733 | 0.43 | -0.9 |
2,856,257 | + | mutS | b2733 | 0.45 | -2.2 |
2,856,257 | + | mutS | b2733 | 0.45 | -0.3 |
2,856,279 | - | mutS | b2733 | 0.45 | +0.2 |
2,856,353 | - | mutS | b2733 | 0.48 | -0.8 |
2,856,353 | - | mutS | b2733 | 0.48 | +0.7 |
2,856,448 | + | mutS | b2733 | 0.52 | -0.2 |
2,856,448 | + | mutS | b2733 | 0.52 | -1.0 |
2,856,468 | - | mutS | b2733 | 0.53 | -2.8 |
2,856,547 | + | mutS | b2733 | 0.56 | +0.2 |
2,856,547 | + | mutS | b2733 | 0.56 | -0.8 |
2,856,580 | - | mutS | b2733 | 0.57 | -0.4 |
2,856,611 | + | mutS | b2733 | 0.58 | -0.9 |
2,856,611 | + | mutS | b2733 | 0.58 | -1.5 |
2,856,612 | + | mutS | b2733 | 0.58 | -0.1 |
2,856,612 | + | mutS | b2733 | 0.58 | +1.1 |
2,856,619 | + | mutS | b2733 | 0.59 | +0.5 |
2,856,636 | + | mutS | b2733 | 0.59 | -0.5 |
2,856,666 | - | mutS | b2733 | 0.61 | -1.7 |
2,856,666 | - | mutS | b2733 | 0.61 | -2.5 |
2,856,697 | + | mutS | b2733 | 0.62 | +0.6 |
2,856,706 | + | mutS | b2733 | 0.62 | -0.4 |
2,856,706 | + | mutS | b2733 | 0.62 | -0.3 |
2,856,746 | + | mutS | b2733 | 0.64 | +0.5 |
2,856,746 | - | mutS | b2733 | 0.64 | +0.0 |
2,856,746 | - | mutS | b2733 | 0.64 | +0.5 |
2,856,799 | + | mutS | b2733 | 0.66 | +0.8 |
2,856,799 | + | mutS | b2733 | 0.66 | -0.0 |
2,856,804 | + | mutS | b2733 | 0.66 | -1.7 |
2,856,812 | - | mutS | b2733 | 0.66 | -0.7 |
2,856,817 | - | mutS | b2733 | 0.66 | -0.2 |
2,856,986 | + | mutS | b2733 | 0.73 | -0.6 |
2,856,999 | - | mutS | b2733 | 0.74 | -1.6 |
2,857,001 | + | mutS | b2733 | 0.74 | -1.5 |
2,857,021 | - | mutS | b2733 | 0.74 | +0.5 |
2,857,089 | - | mutS | b2733 | 0.77 | +1.0 |
2,857,308 | - | mutS | b2733 | 0.86 | +0.2 |
2,857,378 | - | mutS | b2733 | 0.88 | -1.3 |
2,857,378 | - | mutS | b2733 | 0.88 | +0.2 |
2,857,408 | - | mutS | b2733 | 0.90 | -0.8 |
2,857,408 | - | mutS | b2733 | 0.90 | -2.3 |
2,857,453 | - | +1.2 | |||
2,857,453 | - | -1.0 | |||
2,857,512 | + | -0.4 | |||
2,857,543 | + | +0.7 | |||
2,857,566 | + | +0.9 | |||
2,857,570 | - | -0.7 | |||
2,857,575 | - | +1.0 | |||
2,857,577 | + | -1.6 | |||
2,857,591 | - | +0.4 | |||
2,857,617 | + | +0.4 | |||
2,857,621 | + | +1.2 | |||
2,857,621 | + | -2.5 | |||
2,857,621 | + | +1.1 | |||
2,857,621 | + | -0.3 | |||
2,857,621 | + | +0.3 | |||
2,857,631 | + | +0.4 | |||
2,857,649 | + | +0.1 | |||
2,857,665 | + | -1.3 | |||
2,857,665 | + | -0.7 | |||
2,857,719 | + | -0.4 | |||
2,857,743 | + | +0.3 | |||
2,857,743 | + | -2.0 | |||
2,857,747 | + | -0.1 | |||
2,857,780 | - | +0.3 | |||
2,857,784 | + | +2.7 | |||
2,857,785 | - | +1.9 | |||
2,857,786 | + | +1.9 | |||
2,857,786 | + | +0.9 | |||
2,857,787 | + | -1.8 | |||
2,857,788 | + | -1.6 | |||
2,857,794 | - | -0.7 | |||
2,857,795 | - | +0.6 | |||
2,857,829 | + | +0.9 | |||
2,857,829 | + | +1.9 | |||
2,857,838 | - | -0.7 | |||
2,857,868 | + | pphB | b2734 | 0.13 | +1.9 |
2,857,877 | - | pphB | b2734 | 0.14 | -1.7 |
2,857,877 | - | pphB | b2734 | 0.14 | +0.8 |
2,857,942 | + | pphB | b2734 | 0.24 | +1.9 |
2,857,950 | - | pphB | b2734 | 0.26 | +1.0 |
2,857,953 | - | pphB | b2734 | 0.26 | -0.1 |
2,857,955 | - | pphB | b2734 | 0.26 | +0.2 |
2,857,957 | + | pphB | b2734 | 0.27 | +1.9 |
2,857,960 | - | pphB | b2734 | 0.27 | -0.7 |
2,857,961 | - | pphB | b2734 | 0.27 | +4.1 |
2,857,965 | + | pphB | b2734 | 0.28 | +1.9 |
2,857,965 | - | pphB | b2734 | 0.28 | -2.9 |
2,857,965 | - | pphB | b2734 | 0.28 | +0.3 |
2,857,965 | - | pphB | b2734 | 0.28 | +2.0 |
2,857,965 | - | pphB | b2734 | 0.28 | +0.2 |
2,857,973 | - | pphB | b2734 | 0.29 | -2.6 |
2,857,973 | - | pphB | b2734 | 0.29 | -1.4 |
2,857,993 | - | pphB | b2734 | 0.32 | -2.2 |
2,857,993 | - | pphB | b2734 | 0.32 | -0.4 |
2,858,008 | - | pphB | b2734 | 0.34 | +3.0 |
2,858,026 | + | pphB | b2734 | 0.37 | +0.3 |
2,858,056 | + | pphB | b2734 | 0.42 | -0.9 |
2,858,067 | + | pphB | b2734 | 0.43 | +1.9 |
2,858,069 | + | pphB | b2734 | 0.44 | +0.9 |
2,858,146 | + | pphB | b2734 | 0.55 | +0.9 |
2,858,146 | + | pphB | b2734 | 0.55 | +1.9 |
2,858,210 | + | pphB | b2734 | 0.65 | +0.9 |
2,858,261 | - | pphB | b2734 | 0.73 | -1.3 |
2,858,275 | - | pphB | b2734 | 0.75 | -0.4 |
2,858,397 | - | -0.9 | |||
2,858,405 | + | +0.3 | |||
2,858,457 | + | -0.9 | |||
2,858,457 | - | +0.7 | |||
2,858,466 | - | -0.4 | |||
2,858,471 | - | -2.3 | |||
2,858,471 | - | +0.4 | |||
2,858,473 | - | -0.1 | |||
2,858,476 | - | -0.8 | |||
2,858,514 | + | +2.8 | |||
2,858,518 | + | +0.2 | |||
2,858,568 | + | ygbI | b2735 | 0.10 | -0.8 |
2,858,568 | + | ygbI | b2735 | 0.10 | -1.2 |
2,858,618 | - | ygbI | b2735 | 0.17 | +0.6 |
Or see this region's nucleotide sequence