Strain Fitness in Escherichia coli BW25113 around b0873

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthcr and ybjW are separated by 11 nucleotidesybjW and ybjE are separated by 143 nucleotides b0872: hcr - HCP oxidoreductase, NADH-dependent (NCBI), at 910,405 to 911,373 hcr b0873: ybjW - putative prismane (VIMSS), at 911,385 to 913,037 ybjW b0874: ybjE - putative surface protein (VIMSS), at 913,181 to 914,080 ybjE Position (kb) 911 912 913 914Strain fitness (log2 ratio) -2 -1 0 1 2at 910.452 kb on - strandat 910.452 kb on - strandat 910.738 kb on + strand, within hcrat 910.816 kb on - strand, within hcrat 910.826 kb on - strandat 911.125 kb on - strand, within hcrat 911.167 kb on - strand, within hcrat 911.394 kb on + strandat 911.394 kb on + strandat 911.476 kb on - strandat 911.566 kb on + strand, within ybjWat 911.776 kb on - strand, within ybjWat 911.833 kb on + strand, within ybjWat 911.862 kb on + strand, within ybjWat 911.956 kb on + strand, within ybjWat 911.956 kb on + strand, within ybjWat 912.055 kb on - strand, within ybjWat 912.104 kb on + strand, within ybjWat 912.278 kb on - strand, within ybjWat 912.349 kb on - strand, within ybjWat 912.360 kb on + strand, within ybjWat 912.406 kb on - strand, within ybjWat 912.463 kb on + strand, within ybjWat 912.465 kb on - strand, within ybjWat 912.558 kb on + strand, within ybjWat 912.630 kb on + strand, within ybjWat 912.717 kb on + strand, within ybjWat 912.721 kb on - strand, within ybjWat 912.804 kb on + strand, within ybjWat 912.813 kb on + strand, within ybjWat 912.813 kb on + strand, within ybjWat 912.813 kb on + strand, within ybjWat 912.861 kb on + strand, within ybjWat 912.869 kb on - strand, within ybjWat 912.869 kb on - strand, within ybjWat 912.968 kb on + strandat 913.267 kb on + strandat 913.291 kb on + strand, within ybjEat 913.291 kb on + strand, within ybjEat 913.317 kb on + strand, within ybjEat 913.317 kb on + strand, within ybjEat 913.335 kb on - strand, within ybjEat 913.362 kb on - strand, within ybjEat 913.362 kb on - strand, within ybjEat 913.426 kb on + strand, within ybjEat 913.505 kb on - strand, within ybjEat 913.568 kb on + strand, within ybjEat 913.568 kb on + strand, within ybjEat 913.577 kb on - strand, within ybjEat 913.577 kb on - strand, within ybjEat 913.597 kb on - strand, within ybjEat 913.597 kb on - strand, within ybjEat 913.611 kb on - strand, within ybjEat 913.611 kb on - strand, within ybjEat 913.708 kb on + strand, within ybjEat 913.729 kb on - strand, within ybjEat 913.733 kb on + strand, within ybjEat 913.733 kb on + strand, within ybjEat 913.750 kb on + strand, within ybjEat 913.812 kb on + strand, within ybjEat 913.824 kb on + strand, within ybjEat 913.824 kb on + strand, within ybjEat 913.830 kb on - strand, within ybjEat 913.897 kb on - strand, within ybjEat 913.914 kb on + strand, within ybjEat 913.922 kb on + strand, within ybjEat 913.924 kb on - strand, within ybjEat 913.934 kb on + strand, within ybjEat 913.934 kb on + strand, within ybjEat 913.939 kb on + strand, within ybjEat 914.030 kb on + strandat 914.035 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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910,452 - +1.9
910,452 - +0.8
910,738 + hcr b0872 0.34 +1.2
910,816 - hcr b0872 0.42 +1.4
910,826 - +0.5
911,125 - hcr b0872 0.74 +1.6
911,167 - hcr b0872 0.79 +1.4
911,394 + +0.4
911,394 + +0.9
911,476 - -0.1
911,566 + ybjW b0873 0.11 +0.0
911,776 - ybjW b0873 0.24 +0.2
911,833 + ybjW b0873 0.27 +0.1
911,862 + ybjW b0873 0.29 +1.0
911,956 + ybjW b0873 0.35 -0.7
911,956 + ybjW b0873 0.35 -0.7
912,055 - ybjW b0873 0.41 +1.4
912,104 + ybjW b0873 0.43 -0.5
912,278 - ybjW b0873 0.54 -0.4
912,349 - ybjW b0873 0.58 +1.3
912,360 + ybjW b0873 0.59 +0.6
912,406 - ybjW b0873 0.62 +1.6
912,463 + ybjW b0873 0.65 -0.4
912,465 - ybjW b0873 0.65 +0.1
912,558 + ybjW b0873 0.71 -0.1
912,630 + ybjW b0873 0.75 -1.4
912,717 + ybjW b0873 0.81 +0.1
912,721 - ybjW b0873 0.81 +1.6
912,804 + ybjW b0873 0.86 +0.4
912,813 + ybjW b0873 0.86 +1.7
912,813 + ybjW b0873 0.86 +1.6
912,813 + ybjW b0873 0.86 -0.6
912,861 + ybjW b0873 0.89 +0.4
912,869 - ybjW b0873 0.90 +1.3
912,869 - ybjW b0873 0.90 +0.7
912,968 + +1.6
913,267 + +1.1
913,291 + ybjE b0874 0.12 -0.2
913,291 + ybjE b0874 0.12 -0.2
913,317 + ybjE b0874 0.15 +1.0
913,317 + ybjE b0874 0.15 +1.9
913,335 - ybjE b0874 0.17 +0.8
913,362 - ybjE b0874 0.20 +0.1
913,362 - ybjE b0874 0.20 -1.9
913,426 + ybjE b0874 0.27 +1.5
913,505 - ybjE b0874 0.36 -0.9
913,568 + ybjE b0874 0.43 +1.1
913,568 + ybjE b0874 0.43 +0.6
913,577 - ybjE b0874 0.44 +0.3
913,577 - ybjE b0874 0.44 +0.6
913,597 - ybjE b0874 0.46 +0.8
913,597 - ybjE b0874 0.46 -1.3
913,611 - ybjE b0874 0.48 +1.4
913,611 - ybjE b0874 0.48 +1.6
913,708 + ybjE b0874 0.59 -0.4
913,729 - ybjE b0874 0.61 -1.8
913,733 + ybjE b0874 0.61 -2.1
913,733 + ybjE b0874 0.61 -1.1
913,750 + ybjE b0874 0.63 +0.8
913,812 + ybjE b0874 0.70 +0.6
913,824 + ybjE b0874 0.71 +1.1
913,824 + ybjE b0874 0.71 -0.9
913,830 - ybjE b0874 0.72 -0.0
913,897 - ybjE b0874 0.80 -0.0
913,914 + ybjE b0874 0.81 +0.7
913,922 + ybjE b0874 0.82 +1.4
913,924 - ybjE b0874 0.83 -0.1
913,934 + ybjE b0874 0.84 -0.7
913,934 + ybjE b0874 0.84 +0.9
913,939 + ybjE b0874 0.84 +0.3
914,030 + +0.9
914,035 + +1.1

Or see this region's nucleotide sequence