Strain Fitness in Escherichia coli BW25113 around b4261

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpepA and yjgP are separated by 266 nucleotidesyjgP and yjgQ overlap by 1 nucleotides b4260: pepA - leucyl aminopeptidase (NCBI), at 4,482,463 to 4,483,974 pepA b4261: yjgP - conserved inner membrane protein (NCBI), at 4,484,241 to 4,485,341 yjgP b4262: yjgQ - orf, hypothetical protein (VIMSS), at 4,485,341 to 4,486,423 yjgQ Position (kb) 4484 4485 4486Strain fitness (log2 ratio) -3 -2 -1 0 1at 4483.376 kb on + strand, within pepAat 4483.445 kb on - strand, within pepAat 4483.447 kb on + strand, within pepAat 4483.447 kb on + strand, within pepAat 4483.455 kb on - strand, within pepAat 4483.455 kb on - strand, within pepAat 4483.455 kb on - strand, within pepAat 4483.455 kb on - strand, within pepAat 4483.489 kb on - strand, within pepAat 4483.494 kb on - strand, within pepAat 4483.513 kb on - strand, within pepAat 4483.601 kb on + strand, within pepAat 4483.601 kb on + strand, within pepAat 4483.601 kb on + strand, within pepAat 4483.607 kb on - strand, within pepAat 4483.627 kb on + strand, within pepAat 4483.660 kb on - strand, within pepAat 4483.660 kb on - strand, within pepAat 4483.661 kb on - strand, within pepAat 4483.661 kb on - strand, within pepAat 4483.667 kb on + strand, within pepAat 4483.670 kb on - strand, within pepAat 4483.707 kb on - strand, within pepAat 4483.708 kb on + strand, within pepAat 4483.708 kb on + strand, within pepAat 4483.709 kb on + strand, within pepAat 4483.717 kb on + strand, within pepAat 4483.717 kb on + strand, within pepAat 4483.787 kb on - strand, within pepAat 4483.841 kb on + strandat 4483.841 kb on + strandat 4483.875 kb on + strandat 4483.875 kb on + strandat 4483.883 kb on - strandat 4483.910 kb on - strandat 4483.931 kb on + strandat 4483.993 kb on - strandat 4484.039 kb on - strandat 4484.062 kb on - strandat 4484.062 kb on - strandat 4484.119 kb on - strandat 4484.161 kb on + strandat 4485.270 kb on + strandat 4485.328 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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4,483,376 + pepA b4260 0.60 -0.7
4,483,445 - pepA b4260 0.65 -2.0
4,483,447 + pepA b4260 0.65 -0.5
4,483,447 + pepA b4260 0.65 +0.3
4,483,455 - pepA b4260 0.66 -1.7
4,483,455 - pepA b4260 0.66 +0.1
4,483,455 - pepA b4260 0.66 -0.7
4,483,455 - pepA b4260 0.66 -0.1
4,483,489 - pepA b4260 0.68 +0.3
4,483,494 - pepA b4260 0.68 +0.9
4,483,513 - pepA b4260 0.69 -0.4
4,483,601 + pepA b4260 0.75 -0.4
4,483,601 + pepA b4260 0.75 -0.8
4,483,601 + pepA b4260 0.75 -3.2
4,483,607 - pepA b4260 0.76 -0.2
4,483,627 + pepA b4260 0.77 -0.0
4,483,660 - pepA b4260 0.79 -0.7
4,483,660 - pepA b4260 0.79 -2.6
4,483,661 - pepA b4260 0.79 -0.8
4,483,661 - pepA b4260 0.79 -3.3
4,483,667 + pepA b4260 0.80 +1.2
4,483,670 - pepA b4260 0.80 -1.6
4,483,707 - pepA b4260 0.82 -1.1
4,483,708 + pepA b4260 0.82 -3.2
4,483,708 + pepA b4260 0.82 -2.9
4,483,709 + pepA b4260 0.82 -1.7
4,483,717 + pepA b4260 0.83 -3.0
4,483,717 + pepA b4260 0.83 -1.7
4,483,787 - pepA b4260 0.88 -0.7
4,483,841 + -2.6
4,483,841 + +0.5
4,483,875 + -2.8
4,483,875 + -2.3
4,483,883 - -2.8
4,483,910 - -0.2
4,483,931 + -1.3
4,483,993 - -0.3
4,484,039 - +1.6
4,484,062 - +0.6
4,484,062 - +0.0
4,484,119 - +0.2
4,484,161 + +1.1
4,485,270 + -0.5
4,485,328 + +1.1

Or see this region's nucleotide sequence