Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pepA and yjgP are separated by 266 nucleotides yjgP and yjgQ overlap by 1 nucleotides
b4260: pepA - leucyl aminopeptidase (NCBI), at 4,482,463 to 4,483,974
pepA
b4261: yjgP - conserved inner membrane protein (NCBI), at 4,484,241 to 4,485,341
yjgP
b4262: yjgQ - orf, hypothetical protein (VIMSS), at 4,485,341 to 4,486,423
yjgQ
Position (kb)
4484
4485
4486 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4483.376 kb on + strand, within pepA at 4483.445 kb on - strand, within pepA at 4483.447 kb on + strand, within pepA at 4483.447 kb on + strand, within pepA at 4483.455 kb on - strand, within pepA at 4483.455 kb on - strand, within pepA at 4483.455 kb on - strand, within pepA at 4483.455 kb on - strand, within pepA at 4483.489 kb on - strand, within pepA at 4483.494 kb on - strand, within pepA at 4483.513 kb on - strand, within pepA at 4483.601 kb on + strand, within pepA at 4483.601 kb on + strand, within pepA at 4483.601 kb on + strand, within pepA at 4483.607 kb on - strand, within pepA at 4483.627 kb on + strand, within pepA at 4483.660 kb on - strand, within pepA at 4483.660 kb on - strand, within pepA at 4483.661 kb on - strand, within pepA at 4483.661 kb on - strand, within pepA at 4483.667 kb on + strand, within pepA at 4483.670 kb on - strand, within pepA at 4483.707 kb on - strand, within pepA at 4483.708 kb on + strand, within pepA at 4483.708 kb on + strand, within pepA at 4483.709 kb on + strand, within pepA at 4483.717 kb on + strand, within pepA at 4483.717 kb on + strand, within pepA at 4483.787 kb on - strand, within pepA at 4483.841 kb on + strand at 4483.841 kb on + strand at 4483.875 kb on + strand at 4483.875 kb on + strand at 4483.883 kb on - strand at 4483.910 kb on - strand at 4483.931 kb on + strand at 4483.993 kb on - strand at 4484.039 kb on - strand at 4484.062 kb on - strand at 4484.062 kb on - strand at 4484.119 kb on - strand at 4484.161 kb on + strand at 4485.270 kb on + strand at 4485.328 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mzaABCDE remove 4,483,376 + pepA b4260 0.60 -0.7 4,483,445 - pepA b4260 0.65 -2.0 4,483,447 + pepA b4260 0.65 -0.5 4,483,447 + pepA b4260 0.65 +0.3 4,483,455 - pepA b4260 0.66 -1.7 4,483,455 - pepA b4260 0.66 +0.1 4,483,455 - pepA b4260 0.66 -0.7 4,483,455 - pepA b4260 0.66 -0.1 4,483,489 - pepA b4260 0.68 +0.3 4,483,494 - pepA b4260 0.68 +0.9 4,483,513 - pepA b4260 0.69 -0.4 4,483,601 + pepA b4260 0.75 -0.4 4,483,601 + pepA b4260 0.75 -0.8 4,483,601 + pepA b4260 0.75 -3.2 4,483,607 - pepA b4260 0.76 -0.2 4,483,627 + pepA b4260 0.77 -0.0 4,483,660 - pepA b4260 0.79 -0.7 4,483,660 - pepA b4260 0.79 -2.6 4,483,661 - pepA b4260 0.79 -0.8 4,483,661 - pepA b4260 0.79 -3.3 4,483,667 + pepA b4260 0.80 +1.2 4,483,670 - pepA b4260 0.80 -1.6 4,483,707 - pepA b4260 0.82 -1.1 4,483,708 + pepA b4260 0.82 -3.2 4,483,708 + pepA b4260 0.82 -2.9 4,483,709 + pepA b4260 0.82 -1.7 4,483,717 + pepA b4260 0.83 -3.0 4,483,717 + pepA b4260 0.83 -1.7 4,483,787 - pepA b4260 0.88 -0.7 4,483,841 + -2.6 4,483,841 + +0.5 4,483,875 + -2.8 4,483,875 + -2.3 4,483,883 - -2.8 4,483,910 - -0.2 4,483,931 + -1.3 4,483,993 - -0.3 4,484,039 - +1.6 4,484,062 - +0.6 4,484,062 - +0.0 4,484,119 - +0.2 4,484,161 + +1.1 4,485,270 + -0.5 4,485,328 + +1.1
Or see this region's nucleotide sequence