Strain Fitness in Escherichia coli BW25113 around b4129
Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | mzaABCDE |
---|---|---|---|---|---|
remove | |||||
4,350,223 | + | yjdJ | b4127 | 0.42 | -1.6 |
4,350,234 | + | yjdJ | b4127 | 0.46 | -1.4 |
4,350,234 | + | yjdJ | b4127 | 0.46 | -0.1 |
4,350,234 | + | yjdJ | b4127 | 0.46 | +0.3 |
4,350,241 | + | yjdJ | b4127 | 0.49 | +0.2 |
4,350,243 | + | yjdJ | b4127 | 0.49 | +0.4 |
4,350,244 | + | yjdJ | b4127 | 0.50 | +1.1 |
4,350,253 | + | yjdJ | b4127 | 0.53 | +0.0 |
4,350,253 | + | yjdJ | b4127 | 0.53 | +1.3 |
4,350,256 | + | yjdJ | b4127 | 0.54 | -1.5 |
4,350,357 | + | +1.5 | |||
4,350,357 | + | +0.8 | |||
4,350,361 | + | -1.9 | |||
4,350,361 | + | -1.0 | |||
4,350,369 | + | -0.3 | |||
4,350,369 | + | +0.4 | |||
4,350,376 | + | +0.6 | |||
4,350,376 | + | +1.1 | |||
4,350,425 | + | +2.2 | |||
4,350,426 | + | -3.3 | |||
4,350,427 | + | +0.2 | |||
4,350,427 | + | -0.1 | |||
4,350,427 | + | -1.7 | |||
4,350,427 | + | +2.2 | |||
4,350,429 | + | +1.4 | |||
4,350,429 | + | +0.8 | |||
4,350,435 | - | +1.2 | |||
4,350,435 | - | +1.2 | |||
4,350,435 | - | +0.6 | |||
4,350,435 | - | +2.2 | |||
4,350,435 | - | +1.2 | |||
4,350,438 | + | -4.6 | |||
4,350,438 | + | +0.0 | |||
4,350,438 | + | +0.7 | |||
4,350,440 | + | +0.2 | |||
4,350,440 | + | -1.4 | |||
4,350,441 | + | -0.2 | |||
4,350,446 | + | -0.2 | |||
4,350,446 | + | +0.5 | |||
4,350,446 | + | +2.2 | |||
4,350,446 | + | +1.6 | |||
4,350,446 | + | +1.1 | |||
4,350,446 | + | +0.6 | |||
4,350,446 | + | +0.6 | |||
4,350,446 | - | +0.2 | |||
4,350,446 | - | +2.2 | |||
4,350,448 | + | -0.4 | |||
4,350,448 | + | +2.2 | |||
4,350,448 | + | +3.5 | |||
4,350,454 | - | -1.0 | |||
4,350,456 | - | +6.3 | |||
4,350,456 | - | +2.2 | |||
4,350,456 | - | +0.5 | |||
4,350,456 | - | -3.0 | |||
4,350,497 | + | +0.5 | |||
4,350,502 | + | +0.8 | |||
4,350,554 | + | +1.2 | |||
4,350,572 | + | +2.2 | |||
4,350,572 | - | +2.2 | |||
4,350,661 | + | yjdK | b4128 | 0.18 | +2.2 |
4,350,702 | - | yjdK | b4128 | 0.32 | -1.0 |
4,350,702 | - | yjdK | b4128 | 0.32 | +0.2 |
4,350,791 | + | yjdK | b4128 | 0.62 | +2.2 |
4,350,848 | + | yjdK | b4128 | 0.81 | +2.2 |
4,350,861 | + | yjdK | b4128 | 0.86 | +2.2 |
4,350,861 | + | yjdK | b4128 | 0.86 | +2.2 |
4,350,903 | + | -0.6 | |||
4,350,978 | - | yjdO | b4559 | 0.27 | -0.4 |
4,350,978 | - | yjdO | b4559 | 0.27 | -2.1 |
4,350,978 | - | yjdO | b4559 | 0.27 | +0.6 |
4,350,978 | - | yjdO | b4559 | 0.27 | -1.7 |
4,350,978 | - | yjdO | b4559 | 0.27 | +0.6 |
4,350,984 | - | yjdO | b4559 | 0.30 | +0.0 |
4,350,984 | - | yjdO | b4559 | 0.30 | +0.8 |
4,350,991 | - | yjdO | b4559 | 0.34 | -3.0 |
4,350,992 | - | yjdO | b4559 | 0.35 | -1.0 |
4,351,037 | + | yjdO | b4559 | 0.61 | -0.4 |
4,351,040 | - | yjdO | b4559 | 0.63 | +1.2 |
4,351,045 | - | yjdO | b4559 | 0.66 | +1.0 |
4,351,051 | + | yjdO | b4559 | 0.69 | -0.7 |
4,351,052 | + | yjdO | b4559 | 0.70 | +0.6 |
4,351,052 | + | yjdO | b4559 | 0.70 | -1.3 |
4,351,056 | + | yjdO | b4559 | 0.72 | +0.7 |
4,351,056 | + | yjdO | b4559 | 0.72 | +1.9 |
4,351,060 | - | yjdO | b4559 | 0.74 | +2.2 |
4,351,060 | - | yjdO | b4559 | 0.74 | -0.2 |
4,351,064 | - | yjdO | b4559 | 0.76 | -1.3 |
4,351,064 | - | -1.6 | |||
4,351,064 | - | yjdO | b4559 | 0.76 | -1.8 |
4,351,078 | - | yjdO | b4559 | 0.84 | +1.8 |
4,351,078 | - | yjdO | b4559 | 0.84 | +0.1 |
4,351,097 | + | +0.7 | |||
4,351,098 | + | +1.6 | |||
4,351,105 | - | +0.6 | |||
4,351,106 | + | -1.2 | |||
4,351,106 | + | -3.6 | |||
4,351,110 | + | -0.8 | |||
4,351,116 | - | +1.4 | |||
4,351,118 | - | +0.2 | |||
4,351,123 | + | +0.7 | |||
4,351,123 | + | -1.1 | |||
4,351,126 | + | +0.7 | |||
4,351,126 | + | +0.1 | |||
4,351,126 | + | -3.9 | |||
4,351,126 | + | -3.2 | |||
4,351,175 | + | -1.2 | |||
4,351,178 | + | +1.5 | |||
4,351,178 | + | -0.1 | |||
4,351,190 | + | -0.5 | |||
4,351,190 | + | -0.4 | |||
4,351,192 | + | -0.0 | |||
4,351,199 | - | -0.6 | |||
4,351,199 | - | -1.2 | |||
4,351,199 | - | -0.3 | |||
4,351,199 | - | -1.3 | |||
4,351,199 | - | +0.0 | |||
4,351,200 | - | +1.4 | |||
4,351,201 | + | +0.4 | |||
4,351,201 | + | +0.7 | |||
4,351,201 | + | +1.3 | |||
4,351,204 | - | +1.4 | |||
4,351,204 | - | -1.2 | |||
4,351,207 | - | -0.1 | |||
4,351,207 | - | -0.2 | |||
4,351,209 | - | +1.1 | |||
4,351,250 | - | +0.2 | |||
4,351,269 | + | +0.2 | |||
4,351,275 | - | +1.1 | |||
4,351,283 | + | +0.2 | |||
4,351,302 | - | -2.8 | |||
4,351,302 | - | -0.7 | |||
4,351,308 | + | -1.3 | |||
4,351,308 | + | -1.3 | |||
4,351,314 | - | +0.5 | |||
4,351,314 | - | -0.7 | |||
4,351,316 | - | +0.9 | |||
4,351,316 | - | -0.3 | |||
4,351,316 | - | +1.2 | |||
4,351,321 | - | -1.1 | |||
4,351,321 | - | +1.5 | |||
4,351,321 | - | -0.2 | |||
4,351,321 | - | -0.5 | |||
4,351,321 | - | -0.4 | |||
4,351,326 | - | +1.6 | |||
4,351,326 | - | -1.6 | |||
4,351,326 | - | +0.8 | |||
4,351,326 | - | -0.3 | |||
4,351,334 | - | +1.0 | |||
4,351,334 | - | -0.4 | |||
4,351,334 | - | -1.5 | |||
4,351,338 | + | +0.2 | |||
4,351,344 | - | -0.0 | |||
4,351,346 | - | +0.6 | |||
4,351,346 | - | -0.0 | |||
4,351,348 | - | -0.4 | |||
4,351,356 | - | -2.4 | |||
4,351,361 | - | +0.1 | |||
4,351,369 | - | +0.2 | |||
4,351,370 | + | -3.2 | |||
4,351,371 | - | -1.5 | |||
4,351,371 | - | -2.0 | |||
4,351,373 | + | -0.2 | |||
4,351,380 | + | lysU | b4129 | 0.10 | -1.1 |
4,351,381 | - | lysU | b4129 | 0.10 | -0.7 |
4,351,381 | - | lysU | b4129 | 0.10 | +0.6 |
4,351,381 | - | lysU | b4129 | 0.10 | +1.2 |
4,351,381 | - | lysU | b4129 | 0.10 | -1.1 |
4,351,381 | - | lysU | b4129 | 0.10 | +0.1 |
4,351,381 | - | lysU | b4129 | 0.10 | -1.2 |
4,351,383 | - | lysU | b4129 | 0.11 | -2.9 |
4,351,385 | + | lysU | b4129 | 0.11 | -1.7 |
4,351,385 | + | lysU | b4129 | 0.11 | -0.1 |
4,351,385 | + | lysU | b4129 | 0.11 | -0.5 |
4,351,390 | - | lysU | b4129 | 0.11 | -1.1 |
4,351,393 | - | lysU | b4129 | 0.11 | -0.5 |
4,351,393 | - | lysU | b4129 | 0.11 | -1.2 |
4,351,393 | - | lysU | b4129 | 0.11 | -0.9 |
4,351,393 | - | lysU | b4129 | 0.11 | +0.8 |
4,351,393 | - | lysU | b4129 | 0.11 | -1.3 |
4,351,398 | + | lysU | b4129 | 0.12 | +1.4 |
4,351,400 | - | lysU | b4129 | 0.12 | +0.5 |
4,351,406 | - | lysU | b4129 | 0.12 | +0.7 |
4,351,406 | - | lysU | b4129 | 0.12 | +0.1 |
4,351,406 | - | lysU | b4129 | 0.12 | -0.9 |
4,351,406 | - | lysU | b4129 | 0.12 | -0.2 |
4,351,412 | - | lysU | b4129 | 0.12 | -0.2 |
4,351,417 | + | lysU | b4129 | 0.13 | +1.4 |
4,351,422 | - | lysU | b4129 | 0.13 | +0.2 |
4,351,443 | - | lysU | b4129 | 0.14 | -1.2 |
4,351,456 | - | lysU | b4129 | 0.15 | -0.3 |
4,351,470 | - | lysU | b4129 | 0.16 | +0.0 |
4,351,470 | - | lysU | b4129 | 0.16 | -1.2 |
4,351,472 | - | lysU | b4129 | 0.16 | +1.1 |
4,351,483 | - | lysU | b4129 | 0.17 | +0.3 |
4,351,485 | + | lysU | b4129 | 0.17 | -0.4 |
4,351,492 | - | lysU | b4129 | 0.18 | -0.7 |
4,351,524 | + | lysU | b4129 | 0.20 | -1.2 |
4,351,527 | + | lysU | b4129 | 0.20 | -1.6 |
4,351,527 | + | lysU | b4129 | 0.20 | -1.3 |
4,351,527 | - | lysU | b4129 | 0.20 | +0.1 |
4,351,535 | - | lysU | b4129 | 0.21 | +1.0 |
4,351,535 | - | lysU | b4129 | 0.21 | +0.7 |
4,351,535 | - | lysU | b4129 | 0.21 | +0.8 |
4,351,535 | - | lysU | b4129 | 0.21 | -0.5 |
4,351,535 | - | lysU | b4129 | 0.21 | -1.2 |
4,351,536 | - | lysU | b4129 | 0.21 | +0.6 |
4,351,537 | - | lysU | b4129 | 0.21 | +0.4 |
4,351,538 | + | lysU | b4129 | 0.21 | -2.6 |
4,351,538 | + | lysU | b4129 | 0.21 | -2.7 |
4,351,557 | + | lysU | b4129 | 0.22 | +2.6 |
4,351,557 | + | lysU | b4129 | 0.22 | -1.2 |
4,351,586 | + | lysU | b4129 | 0.24 | -3.5 |
4,351,586 | + | lysU | b4129 | 0.24 | -2.0 |
4,351,594 | - | lysU | b4129 | 0.24 | -1.6 |
4,351,594 | - | lysU | b4129 | 0.24 | -1.6 |
4,351,595 | + | lysU | b4129 | 0.25 | -0.2 |
4,351,595 | + | lysU | b4129 | 0.25 | +0.2 |
4,351,599 | - | lysU | b4129 | 0.25 | +0.8 |
4,351,604 | - | lysU | b4129 | 0.25 | -0.1 |
4,351,604 | - | lysU | b4129 | 0.25 | +0.4 |
4,351,604 | - | lysU | b4129 | 0.25 | +0.3 |
4,351,607 | - | lysU | b4129 | 0.25 | -1.0 |
4,351,607 | - | lysU | b4129 | 0.25 | -0.4 |
4,351,607 | - | lysU | b4129 | 0.25 | +0.7 |
4,351,618 | + | lysU | b4129 | 0.26 | -0.2 |
4,351,618 | - | lysU | b4129 | 0.26 | -0.8 |
4,351,618 | - | lysU | b4129 | 0.26 | -0.0 |
4,351,618 | - | lysU | b4129 | 0.26 | -0.2 |
4,351,627 | - | lysU | b4129 | 0.27 | +0.3 |
4,351,635 | - | lysU | b4129 | 0.27 | -0.3 |
4,351,641 | - | lysU | b4129 | 0.28 | -0.7 |
4,351,641 | - | lysU | b4129 | 0.28 | -0.1 |
4,351,657 | + | lysU | b4129 | 0.29 | -1.5 |
4,351,657 | + | lysU | b4129 | 0.29 | -1.8 |
4,351,665 | + | lysU | b4129 | 0.29 | -2.2 |
4,351,665 | + | lysU | b4129 | 0.29 | +1.8 |
4,351,672 | - | lysU | b4129 | 0.30 | -0.1 |
4,351,672 | - | lysU | b4129 | 0.30 | -1.2 |
4,351,685 | - | lysU | b4129 | 0.30 | +0.4 |
4,351,706 | - | lysU | b4129 | 0.32 | +0.2 |
4,351,713 | + | lysU | b4129 | 0.32 | -3.5 |
4,351,755 | - | lysU | b4129 | 0.35 | +0.1 |
4,351,755 | - | lysU | b4129 | 0.35 | -2.4 |
4,351,755 | - | lysU | b4129 | 0.35 | +1.0 |
4,351,798 | + | lysU | b4129 | 0.38 | +0.7 |
4,351,818 | - | lysU | b4129 | 0.39 | -0.2 |
4,351,820 | + | lysU | b4129 | 0.39 | +0.1 |
4,351,826 | - | lysU | b4129 | 0.40 | +0.8 |
4,351,828 | - | lysU | b4129 | 0.40 | -1.7 |
4,351,842 | - | lysU | b4129 | 0.41 | -0.6 |
4,351,842 | - | lysU | b4129 | 0.41 | +0.1 |
4,351,855 | - | lysU | b4129 | 0.42 | -0.1 |
4,351,855 | - | lysU | b4129 | 0.42 | -0.3 |
4,351,858 | + | lysU | b4129 | 0.42 | -1.9 |
4,351,864 | - | lysU | b4129 | 0.42 | +0.2 |
4,351,877 | + | lysU | b4129 | 0.43 | +2.0 |
4,351,895 | - | lysU | b4129 | 0.44 | +1.1 |
4,351,901 | + | lysU | b4129 | 0.45 | -0.8 |
4,351,901 | + | lysU | b4129 | 0.45 | -0.6 |
4,351,901 | - | lysU | b4129 | 0.45 | +0.4 |
4,351,901 | - | lysU | b4129 | 0.45 | +1.1 |
4,351,901 | - | lysU | b4129 | 0.45 | -0.9 |
4,351,911 | + | lysU | b4129 | 0.45 | -0.2 |
4,351,911 | + | lysU | b4129 | 0.45 | +0.7 |
4,351,919 | - | lysU | b4129 | 0.46 | +0.6 |
4,351,919 | - | lysU | b4129 | 0.46 | -0.6 |
4,351,931 | - | lysU | b4129 | 0.47 | -0.8 |
4,351,955 | - | lysU | b4129 | 0.48 | -0.8 |
4,351,989 | - | lysU | b4129 | 0.50 | -0.4 |
4,352,004 | - | lysU | b4129 | 0.51 | -1.3 |
4,352,039 | - | lysU | b4129 | 0.54 | -0.3 |
4,352,063 | - | lysU | b4129 | 0.55 | +0.5 |
4,352,075 | - | lysU | b4129 | 0.56 | -0.2 |
4,352,125 | - | lysU | b4129 | 0.59 | -0.4 |
4,352,136 | - | lysU | b4129 | 0.60 | -1.1 |
4,352,229 | - | lysU | b4129 | 0.66 | +0.9 |
4,352,238 | + | lysU | b4129 | 0.67 | +0.8 |
4,352,265 | - | lysU | b4129 | 0.69 | -1.4 |
4,352,265 | - | lysU | b4129 | 0.69 | +1.2 |
4,352,278 | - | lysU | b4129 | 0.69 | +1.5 |
4,352,289 | - | lysU | b4129 | 0.70 | +1.1 |
4,352,289 | - | lysU | b4129 | 0.70 | +0.2 |
4,352,295 | + | lysU | b4129 | 0.71 | -1.7 |
4,352,312 | - | lysU | b4129 | 0.72 | -0.6 |
4,352,312 | - | lysU | b4129 | 0.72 | +2.4 |
4,352,314 | + | lysU | b4129 | 0.72 | -3.5 |
4,352,314 | + | lysU | b4129 | 0.72 | -1.7 |
4,352,314 | + | lysU | b4129 | 0.72 | -0.4 |
4,352,322 | - | lysU | b4129 | 0.72 | +0.4 |
4,352,322 | - | lysU | b4129 | 0.72 | -0.5 |
4,352,357 | - | lysU | b4129 | 0.75 | -0.1 |
4,352,357 | - | lysU | b4129 | 0.75 | +1.0 |
4,352,373 | + | lysU | b4129 | 0.76 | +0.1 |
4,352,455 | - | lysU | b4129 | 0.81 | -0.2 |
4,352,460 | + | lysU | b4129 | 0.81 | -0.3 |
4,352,460 | + | lysU | b4129 | 0.81 | +1.1 |
4,352,502 | - | lysU | b4129 | 0.84 | -0.6 |
4,352,546 | + | lysU | b4129 | 0.87 | -1.0 |
4,352,606 | + | +1.6 | |||
4,352,607 | - | +0.5 | |||
4,352,636 | + | +0.4 | |||
4,352,643 | - | -2.0 | |||
4,352,647 | + | +1.0 | |||
4,352,653 | - | +0.2 | |||
4,352,705 | + | -0.8 | |||
4,352,705 | + | -1.7 | |||
4,352,738 | - | +0.1 | |||
4,352,779 | - | -0.2 | |||
4,352,779 | - | +1.7 | |||
4,352,780 | - | +1.4 | |||
4,352,780 | - | -0.6 | |||
4,352,789 | + | -0.6 | |||
4,352,789 | + | -1.3 | |||
4,352,799 | - | -0.4 | |||
4,352,799 | - | +0.0 | |||
4,352,804 | - | -0.9 | |||
4,352,804 | - | -1.1 | |||
4,352,809 | - | +1.4 | |||
4,352,809 | - | -1.0 | |||
4,352,809 | - | +0.6 | |||
4,352,830 | + | -4.0 | |||
4,352,845 | + | -1.4 | |||
4,352,862 | + | +1.2 | |||
4,352,997 | - | +0.2 | |||
4,353,049 | + | +2.1 | |||
4,353,054 | + | -0.3 | |||
4,353,062 | - | +1.0 | |||
4,353,062 | - | +1.2 | |||
4,353,064 | + | +0.8 | |||
4,353,067 | - | -1.4 | |||
4,353,072 | - | -0.6 | |||
4,353,072 | - | +1.7 | |||
4,353,072 | - | -1.7 | |||
4,353,100 | + | -1.0 | |||
4,353,129 | + | yjdL | b4130 | 0.10 | -0.3 |
4,353,135 | - | yjdL | b4130 | 0.11 | -0.1 |
4,353,140 | + | yjdL | b4130 | 0.11 | -0.9 |
4,353,150 | + | yjdL | b4130 | 0.12 | -2.7 |
4,353,150 | + | yjdL | b4130 | 0.12 | -0.4 |
4,353,166 | - | yjdL | b4130 | 0.13 | -0.9 |
4,353,282 | - | yjdL | b4130 | 0.21 | +0.3 |
4,353,333 | - | yjdL | b4130 | 0.24 | -0.2 |
4,353,423 | - | yjdL | b4130 | 0.31 | +0.8 |
4,353,423 | - | yjdL | b4130 | 0.31 | -0.9 |
4,353,470 | - | yjdL | b4130 | 0.34 | +1.0 |
4,353,470 | - | yjdL | b4130 | 0.34 | -0.4 |
4,353,475 | - | yjdL | b4130 | 0.34 | +0.7 |
4,353,475 | - | yjdL | b4130 | 0.34 | -0.5 |
4,353,522 | + | yjdL | b4130 | 0.37 | -4.6 |
4,353,560 | + | yjdL | b4130 | 0.40 | -0.8 |
4,353,560 | + | yjdL | b4130 | 0.40 | +0.4 |
4,353,569 | + | yjdL | b4130 | 0.41 | -0.8 |
4,353,569 | + | yjdL | b4130 | 0.41 | +1.4 |
4,353,578 | + | yjdL | b4130 | 0.41 | +0.7 |
4,353,594 | - | yjdL | b4130 | 0.42 | -1.5 |
4,353,597 | + | yjdL | b4130 | 0.43 | -0.3 |
4,353,599 | + | yjdL | b4130 | 0.43 | +0.7 |
4,353,637 | + | yjdL | b4130 | 0.45 | +0.6 |
4,353,645 | + | yjdL | b4130 | 0.46 | +0.7 |
4,353,645 | + | yjdL | b4130 | 0.46 | +0.3 |
4,353,682 | - | yjdL | b4130 | 0.48 | -0.1 |
Or see this region's nucleotide sequence