Strain Fitness in Escherichia coli BW25113 around b3803

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemY and hemX are separated by 2 nucleotideshemX and hemD are separated by 21 nucleotideshemD and hemC overlap by 4 nucleotides b3802: hemY - predicted protoheme IX synthesis protein (NCBI), at 3,984,709 to 3,985,905 hemY b3803: hemX - predicted uroporphyrinogen III methylase (NCBI), at 3,985,908 to 3,987,089 hemX b3804: hemD - uroporphyrinogen-III synthetase (NCBI), at 3,987,111 to 3,987,851 hemD b3805: hemC - porphobilinogen deaminase (NCBI), at 3,987,848 to 3,988,789 hemC Position (kb) 3985 3986 3987 3988Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3984.908 kb on - strand, within hemYat 3984.908 kb on - strand, within hemYat 3984.911 kb on + strand, within hemYat 3984.911 kb on + strand, within hemYat 3984.914 kb on - strand, within hemYat 3984.914 kb on - strand, within hemYat 3984.926 kb on - strand, within hemYat 3984.926 kb on - strand, within hemYat 3985.008 kb on + strand, within hemYat 3985.041 kb on - strand, within hemYat 3985.083 kb on + strand, within hemYat 3985.115 kb on + strand, within hemYat 3985.115 kb on - strand, within hemYat 3985.118 kb on + strand, within hemYat 3985.120 kb on + strand, within hemYat 3985.121 kb on - strand, within hemYat 3985.121 kb on - strand, within hemYat 3985.121 kb on - strand, within hemYat 3985.146 kb on - strand, within hemYat 3985.174 kb on + strand, within hemYat 3985.177 kb on - strand, within hemYat 3985.189 kb on + strand, within hemYat 3985.189 kb on + strand, within hemYat 3985.208 kb on + strand, within hemYat 3985.208 kb on + strand, within hemYat 3985.211 kb on - strand, within hemYat 3985.230 kb on - strand, within hemYat 3985.230 kb on - strand, within hemYat 3985.230 kb on - strand, within hemYat 3985.255 kb on - strand, within hemYat 3985.255 kb on - strand, within hemYat 3985.260 kb on - strand, within hemYat 3985.273 kb on + strand, within hemYat 3985.287 kb on + strand, within hemYat 3985.302 kb on - strand, within hemYat 3985.305 kb on - strand, within hemYat 3985.305 kb on - strand, within hemYat 3985.315 kb on - strand, within hemYat 3985.321 kb on - strand, within hemYat 3985.321 kb on - strand, within hemYat 3985.321 kb on - strand, within hemYat 3985.334 kb on - strand, within hemYat 3985.334 kb on - strand, within hemYat 3985.356 kb on + strand, within hemYat 3985.379 kb on - strand, within hemYat 3985.383 kb on - strand, within hemYat 3985.383 kb on - strand, within hemYat 3985.394 kb on - strand, within hemYat 3985.425 kb on + strand, within hemYat 3985.425 kb on + strand, within hemYat 3985.430 kb on - strand, within hemYat 3985.488 kb on - strand, within hemYat 3985.498 kb on - strand, within hemYat 3985.536 kb on + strand, within hemYat 3985.536 kb on + strand, within hemYat 3985.544 kb on - strand, within hemYat 3985.544 kb on - strand, within hemYat 3985.544 kb on - strand, within hemYat 3985.546 kb on + strand, within hemYat 3985.554 kb on - strand, within hemYat 3985.643 kb on + strand, within hemYat 3985.778 kb on + strand, within hemYat 3985.799 kb on - strandat 3985.819 kb on - strandat 3985.824 kb on - strandat 3985.905 kb on + strandat 3985.905 kb on + strandat 3985.954 kb on + strandat 3985.957 kb on - strandat 3985.968 kb on - strandat 3985.981 kb on + strandat 3985.981 kb on + strandat 3985.984 kb on + strandat 3985.984 kb on + strandat 3986.026 kb on + strandat 3986.084 kb on + strand, within hemXat 3986.084 kb on + strand, within hemXat 3986.092 kb on - strand, within hemXat 3986.129 kb on + strand, within hemXat 3986.139 kb on + strand, within hemXat 3986.139 kb on + strand, within hemXat 3986.149 kb on - strand, within hemXat 3986.150 kb on + strand, within hemXat 3986.151 kb on + strand, within hemXat 3986.151 kb on + strand, within hemXat 3986.168 kb on + strand, within hemXat 3986.168 kb on + strand, within hemXat 3986.180 kb on + strand, within hemXat 3986.180 kb on + strand, within hemXat 3986.207 kb on + strand, within hemXat 3986.207 kb on + strand, within hemXat 3986.215 kb on - strand, within hemXat 3986.215 kb on - strand, within hemXat 3986.280 kb on - strand, within hemXat 3986.356 kb on + strand, within hemXat 3986.356 kb on + strand, within hemXat 3986.385 kb on - strand, within hemXat 3986.387 kb on + strand, within hemXat 3986.432 kb on - strand, within hemXat 3986.491 kb on + strand, within hemXat 3986.491 kb on + strand, within hemXat 3986.498 kb on - strand, within hemXat 3986.510 kb on + strand, within hemXat 3986.510 kb on + strand, within hemXat 3986.512 kb on + strand, within hemXat 3986.536 kb on + strand, within hemXat 3986.536 kb on + strand, within hemXat 3986.539 kb on - strand, within hemXat 3986.564 kb on - strand, within hemXat 3986.571 kb on + strand, within hemXat 3986.571 kb on + strand, within hemXat 3986.601 kb on + strand, within hemXat 3986.609 kb on + strand, within hemXat 3986.618 kb on - strand, within hemXat 3986.620 kb on + strand, within hemXat 3986.623 kb on + strand, within hemXat 3986.627 kb on + strand, within hemXat 3986.627 kb on + strand, within hemXat 3986.628 kb on + strand, within hemXat 3986.638 kb on + strand, within hemXat 3986.638 kb on + strand, within hemXat 3986.812 kb on - strand, within hemXat 3986.846 kb on - strand, within hemXat 3986.897 kb on + strand, within hemXat 3986.897 kb on + strand, within hemXat 3986.922 kb on + strand, within hemXat 3986.948 kb on + strand, within hemXat 3986.964 kb on - strand, within hemXat 3986.964 kb on - strand, within hemXat 3987.023 kb on + strandat 3987.023 kb on + strandat 3987.027 kb on - strandat 3987.027 kb on - strandat 3987.031 kb on + strandat 3987.033 kb on + strandat 3987.048 kb on + strandat 3987.048 kb on - strandat 3987.051 kb on - strandat 3987.059 kb on - strandat 3987.101 kb on + strandat 3987.114 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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3,984,908 - hemY b3802 0.17 +1.1
3,984,908 - hemY b3802 0.17 +2.2
3,984,911 + hemY b3802 0.17 +0.4
3,984,911 + hemY b3802 0.17 +0.4
3,984,914 - hemY b3802 0.17 -0.3
3,984,914 - hemY b3802 0.17 +0.6
3,984,926 - hemY b3802 0.18 +0.4
3,984,926 - hemY b3802 0.18 +0.1
3,985,008 + hemY b3802 0.25 -1.0
3,985,041 - hemY b3802 0.28 -1.2
3,985,083 + hemY b3802 0.31 -3.6
3,985,115 + hemY b3802 0.34 -0.2
3,985,115 - hemY b3802 0.34 -1.5
3,985,118 + hemY b3802 0.34 -1.3
3,985,120 + hemY b3802 0.34 -4.2
3,985,121 - hemY b3802 0.34 -1.9
3,985,121 - hemY b3802 0.34 -0.1
3,985,121 - hemY b3802 0.34 +0.9
3,985,146 - hemY b3802 0.37 -1.4
3,985,174 + hemY b3802 0.39 -2.2
3,985,177 - hemY b3802 0.39 +0.1
3,985,189 + hemY b3802 0.40 -1.1
3,985,189 + hemY b3802 0.40 -1.3
3,985,208 + hemY b3802 0.42 -1.2
3,985,208 + hemY b3802 0.42 -1.7
3,985,211 - hemY b3802 0.42 -0.3
3,985,230 - hemY b3802 0.44 +0.3
3,985,230 - hemY b3802 0.44 -1.3
3,985,230 - hemY b3802 0.44 -2.0
3,985,255 - hemY b3802 0.46 +1.0
3,985,255 - hemY b3802 0.46 -0.2
3,985,260 - hemY b3802 0.46 -4.7
3,985,273 + hemY b3802 0.47 +0.1
3,985,287 + hemY b3802 0.48 -1.4
3,985,302 - hemY b3802 0.50 -0.0
3,985,305 - hemY b3802 0.50 -1.0
3,985,305 - hemY b3802 0.50 -0.7
3,985,315 - hemY b3802 0.51 -0.9
3,985,321 - hemY b3802 0.51 -1.5
3,985,321 - hemY b3802 0.51 -0.6
3,985,321 - hemY b3802 0.51 +0.3
3,985,334 - hemY b3802 0.52 +0.9
3,985,334 - hemY b3802 0.52 +0.3
3,985,356 + hemY b3802 0.54 -0.3
3,985,379 - hemY b3802 0.56 -0.2
3,985,383 - hemY b3802 0.56 -2.5
3,985,383 - hemY b3802 0.56 +0.3
3,985,394 - hemY b3802 0.57 +0.1
3,985,425 + hemY b3802 0.60 -2.5
3,985,425 + hemY b3802 0.60 -3.0
3,985,430 - hemY b3802 0.60 +0.0
3,985,488 - hemY b3802 0.65 -1.8
3,985,498 - hemY b3802 0.66 -1.7
3,985,536 + hemY b3802 0.69 +0.8
3,985,536 + hemY b3802 0.69 -1.3
3,985,544 - hemY b3802 0.70 -0.5
3,985,544 - hemY b3802 0.70 -0.6
3,985,544 - hemY b3802 0.70 -2.4
3,985,546 + hemY b3802 0.70 -1.8
3,985,554 - hemY b3802 0.71 -1.5
3,985,643 + hemY b3802 0.78 -3.3
3,985,778 + hemY b3802 0.89 -4.4
3,985,799 - -1.2
3,985,819 - -1.1
3,985,824 - -1.9
3,985,905 + -0.0
3,985,905 + -1.2
3,985,954 + +0.3
3,985,957 - -4.6
3,985,968 - -1.0
3,985,981 + -0.6
3,985,981 + -1.6
3,985,984 + +1.0
3,985,984 + -1.4
3,986,026 + -1.9
3,986,084 + hemX b3803 0.15 -1.2
3,986,084 + hemX b3803 0.15 -1.7
3,986,092 - hemX b3803 0.16 -2.5
3,986,129 + hemX b3803 0.19 -1.6
3,986,139 + hemX b3803 0.20 -2.5
3,986,139 + hemX b3803 0.20 -1.8
3,986,149 - hemX b3803 0.20 -1.3
3,986,150 + hemX b3803 0.20 +0.2
3,986,151 + hemX b3803 0.21 -2.1
3,986,151 + hemX b3803 0.21 -4.6
3,986,168 + hemX b3803 0.22 -3.0
3,986,168 + hemX b3803 0.22 +0.8
3,986,180 + hemX b3803 0.23 +0.1
3,986,180 + hemX b3803 0.23 -0.4
3,986,207 + hemX b3803 0.25 -2.7
3,986,207 + hemX b3803 0.25 +1.2
3,986,215 - hemX b3803 0.26 -2.3
3,986,215 - hemX b3803 0.26 -0.8
3,986,280 - hemX b3803 0.31 -1.6
3,986,356 + hemX b3803 0.38 -1.1
3,986,356 + hemX b3803 0.38 -3.8
3,986,385 - hemX b3803 0.40 -1.0
3,986,387 + hemX b3803 0.41 +0.3
3,986,432 - hemX b3803 0.44 -2.5
3,986,491 + hemX b3803 0.49 -1.1
3,986,491 + hemX b3803 0.49 -3.2
3,986,498 - hemX b3803 0.50 -2.3
3,986,510 + hemX b3803 0.51 -3.3
3,986,510 + hemX b3803 0.51 -0.9
3,986,512 + hemX b3803 0.51 -5.2
3,986,536 + hemX b3803 0.53 -1.7
3,986,536 + hemX b3803 0.53 -2.1
3,986,539 - hemX b3803 0.53 -1.0
3,986,564 - hemX b3803 0.55 -1.5
3,986,571 + hemX b3803 0.56 +0.3
3,986,571 + hemX b3803 0.56 +0.4
3,986,601 + hemX b3803 0.59 -4.1
3,986,609 + hemX b3803 0.59 +0.3
3,986,618 - hemX b3803 0.60 -0.2
3,986,620 + hemX b3803 0.60 -0.8
3,986,623 + hemX b3803 0.60 -4.9
3,986,627 + hemX b3803 0.61 -1.2
3,986,627 + hemX b3803 0.61 -2.4
3,986,628 + hemX b3803 0.61 -3.2
3,986,638 + hemX b3803 0.62 -3.3
3,986,638 + hemX b3803 0.62 -3.4
3,986,812 - hemX b3803 0.76 -0.9
3,986,846 - hemX b3803 0.79 -4.8
3,986,897 + hemX b3803 0.84 -4.6
3,986,897 + hemX b3803 0.84 -2.4
3,986,922 + hemX b3803 0.86 -1.4
3,986,948 + hemX b3803 0.88 -2.0
3,986,964 - hemX b3803 0.89 +1.8
3,986,964 - hemX b3803 0.89 +0.3
3,987,023 + -2.1
3,987,023 + -0.6
3,987,027 - -0.9
3,987,027 - +0.3
3,987,031 + -0.3
3,987,033 + -3.0
3,987,048 + -1.9
3,987,048 - -2.2
3,987,051 - +0.8
3,987,059 - -0.1
3,987,101 + -1.1
3,987,114 + -0.4

Or see this region's nucleotide sequence