Strain Fitness in Escherichia coli BW25113 around b3803
Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | mzaABCDE |
---|---|---|---|---|---|
remove | |||||
3,984,908 | - | hemY | b3802 | 0.17 | +1.1 |
3,984,908 | - | hemY | b3802 | 0.17 | +2.2 |
3,984,911 | + | hemY | b3802 | 0.17 | +0.4 |
3,984,911 | + | hemY | b3802 | 0.17 | +0.4 |
3,984,914 | - | hemY | b3802 | 0.17 | -0.3 |
3,984,914 | - | hemY | b3802 | 0.17 | +0.6 |
3,984,926 | - | hemY | b3802 | 0.18 | +0.4 |
3,984,926 | - | hemY | b3802 | 0.18 | +0.1 |
3,985,008 | + | hemY | b3802 | 0.25 | -1.0 |
3,985,041 | - | hemY | b3802 | 0.28 | -1.2 |
3,985,083 | + | hemY | b3802 | 0.31 | -3.6 |
3,985,115 | + | hemY | b3802 | 0.34 | -0.2 |
3,985,115 | - | hemY | b3802 | 0.34 | -1.5 |
3,985,118 | + | hemY | b3802 | 0.34 | -1.3 |
3,985,120 | + | hemY | b3802 | 0.34 | -4.2 |
3,985,121 | - | hemY | b3802 | 0.34 | -1.9 |
3,985,121 | - | hemY | b3802 | 0.34 | -0.1 |
3,985,121 | - | hemY | b3802 | 0.34 | +0.9 |
3,985,146 | - | hemY | b3802 | 0.37 | -1.4 |
3,985,174 | + | hemY | b3802 | 0.39 | -2.2 |
3,985,177 | - | hemY | b3802 | 0.39 | +0.1 |
3,985,189 | + | hemY | b3802 | 0.40 | -1.1 |
3,985,189 | + | hemY | b3802 | 0.40 | -1.3 |
3,985,208 | + | hemY | b3802 | 0.42 | -1.2 |
3,985,208 | + | hemY | b3802 | 0.42 | -1.7 |
3,985,211 | - | hemY | b3802 | 0.42 | -0.3 |
3,985,230 | - | hemY | b3802 | 0.44 | +0.3 |
3,985,230 | - | hemY | b3802 | 0.44 | -1.3 |
3,985,230 | - | hemY | b3802 | 0.44 | -2.0 |
3,985,255 | - | hemY | b3802 | 0.46 | +1.0 |
3,985,255 | - | hemY | b3802 | 0.46 | -0.2 |
3,985,260 | - | hemY | b3802 | 0.46 | -4.7 |
3,985,273 | + | hemY | b3802 | 0.47 | +0.1 |
3,985,287 | + | hemY | b3802 | 0.48 | -1.4 |
3,985,302 | - | hemY | b3802 | 0.50 | -0.0 |
3,985,305 | - | hemY | b3802 | 0.50 | -1.0 |
3,985,305 | - | hemY | b3802 | 0.50 | -0.7 |
3,985,315 | - | hemY | b3802 | 0.51 | -0.9 |
3,985,321 | - | hemY | b3802 | 0.51 | -1.5 |
3,985,321 | - | hemY | b3802 | 0.51 | -0.6 |
3,985,321 | - | hemY | b3802 | 0.51 | +0.3 |
3,985,334 | - | hemY | b3802 | 0.52 | +0.9 |
3,985,334 | - | hemY | b3802 | 0.52 | +0.3 |
3,985,356 | + | hemY | b3802 | 0.54 | -0.3 |
3,985,379 | - | hemY | b3802 | 0.56 | -0.2 |
3,985,383 | - | hemY | b3802 | 0.56 | -2.5 |
3,985,383 | - | hemY | b3802 | 0.56 | +0.3 |
3,985,394 | - | hemY | b3802 | 0.57 | +0.1 |
3,985,425 | + | hemY | b3802 | 0.60 | -2.5 |
3,985,425 | + | hemY | b3802 | 0.60 | -3.0 |
3,985,430 | - | hemY | b3802 | 0.60 | +0.0 |
3,985,488 | - | hemY | b3802 | 0.65 | -1.8 |
3,985,498 | - | hemY | b3802 | 0.66 | -1.7 |
3,985,536 | + | hemY | b3802 | 0.69 | +0.8 |
3,985,536 | + | hemY | b3802 | 0.69 | -1.3 |
3,985,544 | - | hemY | b3802 | 0.70 | -0.5 |
3,985,544 | - | hemY | b3802 | 0.70 | -0.6 |
3,985,544 | - | hemY | b3802 | 0.70 | -2.4 |
3,985,546 | + | hemY | b3802 | 0.70 | -1.8 |
3,985,554 | - | hemY | b3802 | 0.71 | -1.5 |
3,985,643 | + | hemY | b3802 | 0.78 | -3.3 |
3,985,778 | + | hemY | b3802 | 0.89 | -4.4 |
3,985,799 | - | -1.2 | |||
3,985,819 | - | -1.1 | |||
3,985,824 | - | -1.9 | |||
3,985,905 | + | -0.0 | |||
3,985,905 | + | -1.2 | |||
3,985,954 | + | +0.3 | |||
3,985,957 | - | -4.6 | |||
3,985,968 | - | -1.0 | |||
3,985,981 | + | -0.6 | |||
3,985,981 | + | -1.6 | |||
3,985,984 | + | +1.0 | |||
3,985,984 | + | -1.4 | |||
3,986,026 | + | -1.9 | |||
3,986,084 | + | hemX | b3803 | 0.15 | -1.2 |
3,986,084 | + | hemX | b3803 | 0.15 | -1.7 |
3,986,092 | - | hemX | b3803 | 0.16 | -2.5 |
3,986,129 | + | hemX | b3803 | 0.19 | -1.6 |
3,986,139 | + | hemX | b3803 | 0.20 | -2.5 |
3,986,139 | + | hemX | b3803 | 0.20 | -1.8 |
3,986,149 | - | hemX | b3803 | 0.20 | -1.3 |
3,986,150 | + | hemX | b3803 | 0.20 | +0.2 |
3,986,151 | + | hemX | b3803 | 0.21 | -2.1 |
3,986,151 | + | hemX | b3803 | 0.21 | -4.6 |
3,986,168 | + | hemX | b3803 | 0.22 | -3.0 |
3,986,168 | + | hemX | b3803 | 0.22 | +0.8 |
3,986,180 | + | hemX | b3803 | 0.23 | +0.1 |
3,986,180 | + | hemX | b3803 | 0.23 | -0.4 |
3,986,207 | + | hemX | b3803 | 0.25 | -2.7 |
3,986,207 | + | hemX | b3803 | 0.25 | +1.2 |
3,986,215 | - | hemX | b3803 | 0.26 | -2.3 |
3,986,215 | - | hemX | b3803 | 0.26 | -0.8 |
3,986,280 | - | hemX | b3803 | 0.31 | -1.6 |
3,986,356 | + | hemX | b3803 | 0.38 | -1.1 |
3,986,356 | + | hemX | b3803 | 0.38 | -3.8 |
3,986,385 | - | hemX | b3803 | 0.40 | -1.0 |
3,986,387 | + | hemX | b3803 | 0.41 | +0.3 |
3,986,432 | - | hemX | b3803 | 0.44 | -2.5 |
3,986,491 | + | hemX | b3803 | 0.49 | -1.1 |
3,986,491 | + | hemX | b3803 | 0.49 | -3.2 |
3,986,498 | - | hemX | b3803 | 0.50 | -2.3 |
3,986,510 | + | hemX | b3803 | 0.51 | -3.3 |
3,986,510 | + | hemX | b3803 | 0.51 | -0.9 |
3,986,512 | + | hemX | b3803 | 0.51 | -5.2 |
3,986,536 | + | hemX | b3803 | 0.53 | -1.7 |
3,986,536 | + | hemX | b3803 | 0.53 | -2.1 |
3,986,539 | - | hemX | b3803 | 0.53 | -1.0 |
3,986,564 | - | hemX | b3803 | 0.55 | -1.5 |
3,986,571 | + | hemX | b3803 | 0.56 | +0.3 |
3,986,571 | + | hemX | b3803 | 0.56 | +0.4 |
3,986,601 | + | hemX | b3803 | 0.59 | -4.1 |
3,986,609 | + | hemX | b3803 | 0.59 | +0.3 |
3,986,618 | - | hemX | b3803 | 0.60 | -0.2 |
3,986,620 | + | hemX | b3803 | 0.60 | -0.8 |
3,986,623 | + | hemX | b3803 | 0.60 | -4.9 |
3,986,627 | + | hemX | b3803 | 0.61 | -1.2 |
3,986,627 | + | hemX | b3803 | 0.61 | -2.4 |
3,986,628 | + | hemX | b3803 | 0.61 | -3.2 |
3,986,638 | + | hemX | b3803 | 0.62 | -3.3 |
3,986,638 | + | hemX | b3803 | 0.62 | -3.4 |
3,986,812 | - | hemX | b3803 | 0.76 | -0.9 |
3,986,846 | - | hemX | b3803 | 0.79 | -4.8 |
3,986,897 | + | hemX | b3803 | 0.84 | -4.6 |
3,986,897 | + | hemX | b3803 | 0.84 | -2.4 |
3,986,922 | + | hemX | b3803 | 0.86 | -1.4 |
3,986,948 | + | hemX | b3803 | 0.88 | -2.0 |
3,986,964 | - | hemX | b3803 | 0.89 | +1.8 |
3,986,964 | - | hemX | b3803 | 0.89 | +0.3 |
3,987,023 | + | -2.1 | |||
3,987,023 | + | -0.6 | |||
3,987,027 | - | -0.9 | |||
3,987,027 | - | +0.3 | |||
3,987,031 | + | -0.3 | |||
3,987,033 | + | -3.0 | |||
3,987,048 | + | -1.9 | |||
3,987,048 | - | -2.2 | |||
3,987,051 | - | +0.8 | |||
3,987,059 | - | -0.1 | |||
3,987,101 | + | -1.1 | |||
3,987,114 | + | -0.4 |
Or see this region's nucleotide sequence