Strain Fitness in Escherichia coli BW25113 around b2893

Experiment: mzaABCDE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrecJ and dsbC are separated by 5 nucleotidesdsbC and xerD are separated by 24 nucleotides b2892: recJ - ssDNA exonuclease, 5' --> 3'-specific (NCBI), at 3,034,395 to 3,036,128 recJ b2893: dsbC - protein disulfide isomerase II (NCBI), at 3,036,134 to 3,036,844 dsbC b2894: xerD - site-specific tyrosine recombinase XerD (NCBI), at 3,036,869 to 3,037,765 xerD Position (kb) 3036 3037Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3035.135 kb on - strand, within recJat 3035.270 kb on + strand, within recJat 3035.433 kb on + strand, within recJat 3035.454 kb on - strand, within recJat 3035.489 kb on + strand, within recJat 3035.680 kb on - strand, within recJat 3035.751 kb on - strand, within recJat 3035.751 kb on - strand, within recJat 3035.754 kb on + strand, within recJat 3035.754 kb on + strand, within recJat 3035.757 kb on - strand, within recJat 3035.762 kb on - strand, within recJat 3035.768 kb on + strand, within recJat 3035.768 kb on + strand, within recJat 3035.776 kb on - strand, within recJat 3035.789 kb on - strand, within recJat 3035.789 kb on - strand, within recJat 3035.802 kb on + strand, within recJat 3035.802 kb on + strand, within recJat 3035.807 kb on + strandat 3035.815 kb on - strand, within recJat 3035.854 kb on - strand, within recJat 3035.854 kb on - strand, within recJat 3035.864 kb on - strand, within recJat 3035.869 kb on - strand, within recJat 3035.906 kb on - strand, within recJat 3035.906 kb on - strandat 3035.960 kb on - strandat 3035.996 kb on - strandat 3035.996 kb on - strandat 3035.996 kb on - strandat 3036.046 kb on - strandat 3036.068 kb on - strandat 3036.229 kb on + strand, within dsbCat 3036.229 kb on - strand, within dsbCat 3036.268 kb on + strand, within dsbCat 3036.457 kb on - strand, within dsbCat 3036.511 kb on + strand, within dsbCat 3036.511 kb on + strand, within dsbCat 3036.613 kb on - strand, within dsbCat 3036.626 kb on - strand, within dsbCat 3036.660 kb on - strand, within dsbCat 3036.660 kb on - strand, within dsbCat 3036.666 kb on + strand, within dsbCat 3036.668 kb on + strand, within dsbCat 3036.761 kb on + strand, within dsbCat 3037.372 kb on + strand, within xerDat 3037.773 kb on + strandat 3037.777 kb on + strandat 3037.777 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
remove
3,035,135 - recJ b2892 0.43 +0.3
3,035,270 + recJ b2892 0.50 -0.2
3,035,433 + recJ b2892 0.60 -0.2
3,035,454 - recJ b2892 0.61 -1.7
3,035,489 + recJ b2892 0.63 -1.6
3,035,680 - recJ b2892 0.74 +0.6
3,035,751 - recJ b2892 0.78 +0.9
3,035,751 - recJ b2892 0.78 +0.9
3,035,754 + recJ b2892 0.78 -0.3
3,035,754 + recJ b2892 0.78 +1.1
3,035,757 - recJ b2892 0.79 -0.4
3,035,762 - recJ b2892 0.79 -0.6
3,035,768 + recJ b2892 0.79 -3.0
3,035,768 + recJ b2892 0.79 +0.6
3,035,776 - recJ b2892 0.80 -0.7
3,035,789 - recJ b2892 0.80 -0.4
3,035,789 - recJ b2892 0.80 -1.6
3,035,802 + recJ b2892 0.81 +0.2
3,035,802 + recJ b2892 0.81 -0.9
3,035,807 + -2.3
3,035,815 - recJ b2892 0.82 +0.3
3,035,854 - recJ b2892 0.84 -0.1
3,035,854 - recJ b2892 0.84 -0.9
3,035,864 - recJ b2892 0.85 -1.3
3,035,869 - recJ b2892 0.85 +0.4
3,035,906 - recJ b2892 0.87 -0.3
3,035,906 - -1.8
3,035,960 - -1.6
3,035,996 - -0.9
3,035,996 - -0.4
3,035,996 - -0.7
3,036,046 - +0.9
3,036,068 - -1.4
3,036,229 + dsbC b2893 0.13 -2.8
3,036,229 - dsbC b2893 0.13 -4.3
3,036,268 + dsbC b2893 0.19 -1.5
3,036,457 - dsbC b2893 0.45 -5.8
3,036,511 + dsbC b2893 0.53 -4.9
3,036,511 + dsbC b2893 0.53 -3.9
3,036,613 - dsbC b2893 0.67 -1.3
3,036,626 - dsbC b2893 0.69 -1.0
3,036,660 - dsbC b2893 0.74 -0.2
3,036,660 - dsbC b2893 0.74 -1.9
3,036,666 + dsbC b2893 0.75 -1.9
3,036,668 + dsbC b2893 0.75 -0.6
3,036,761 + dsbC b2893 0.88 -3.4
3,037,372 + xerD b2894 0.56 -0.1
3,037,773 + -3.5
3,037,777 + -0.9
3,037,777 + +0.3

Or see this region's nucleotide sequence