Strain Fitness in Escherichia coli BW25113 around b2275

Experiment: mzaABCDE

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfbN and yfbO are separated by 208 nucleotidesyfbO and yfbP are separated by 58 nucleotidesyfbP and nuoN are separated by 83 nucleotides b2273: yfbN - hypothetical protein (NCBI), at 2,385,732 to 2,386,448 yfbN b2274: yfbO - predicted protein (RefSeq), at 2,386,657 to 2,387,079 yfbO b2275: yfbP - TPR-like repeats-containing protein (NCBI), at 2,387,138 to 2,387,986 yfbP b2276: nuoN - NADH:ubiquinone oxidoreductase, membrane subunit N (RefSeq), at 2,388,070 to 2,389,527 nuoN Position (kb) 2387 2388Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2386.671 kb on - strandat 2386.721 kb on - strand, within yfbOat 2386.781 kb on - strand, within yfbOat 2386.781 kb on - strand, within yfbOat 2386.788 kb on - strand, within yfbOat 2386.819 kb on + strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.859 kb on - strand, within yfbOat 2386.870 kb on - strand, within yfbOat 2386.885 kb on - strand, within yfbOat 2386.898 kb on - strand, within yfbOat 2386.898 kb on - strand, within yfbOat 2386.908 kb on - strand, within yfbOat 2386.992 kb on - strand, within yfbOat 2386.992 kb on - strand, within yfbOat 2386.997 kb on + strand, within yfbOat 2387.005 kb on - strand, within yfbOat 2387.005 kb on - strand, within yfbOat 2387.013 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.020 kb on + strand, within yfbOat 2387.022 kb on + strand, within yfbOat 2387.041 kb on + strandat 2387.041 kb on + strandat 2387.044 kb on + strandat 2387.044 kb on + strandat 2387.046 kb on + strandat 2387.048 kb on + strandat 2387.048 kb on - strandat 2387.066 kb on - strandat 2387.214 kb on + strandat 2387.237 kb on + strand, within yfbPat 2387.245 kb on - strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.266 kb on + strand, within yfbPat 2387.269 kb on - strand, within yfbPat 2387.280 kb on + strand, within yfbPat 2387.294 kb on - strand, within yfbPat 2387.297 kb on + strand, within yfbPat 2387.354 kb on + strand, within yfbPat 2387.512 kb on + strand, within yfbPat 2387.545 kb on - strand, within yfbPat 2387.600 kb on - strand, within yfbPat 2387.600 kb on - strand, within yfbPat 2387.640 kb on + strand, within yfbPat 2387.640 kb on + strand, within yfbPat 2387.671 kb on + strand, within yfbPat 2387.675 kb on + strand, within yfbPat 2387.677 kb on + strand, within yfbPat 2387.687 kb on - strand, within yfbPat 2387.687 kb on - strand, within yfbPat 2387.791 kb on + strand, within yfbPat 2387.843 kb on - strand, within yfbPat 2387.845 kb on + strand, within yfbPat 2387.853 kb on - strand, within yfbPat 2387.981 kb on + strandat 2387.981 kb on + strandat 2387.993 kb on + strandat 2388.014 kb on - strandat 2388.014 kb on - strandat 2388.125 kb on - strandat 2388.131 kb on - strandat 2388.131 kb on - strandat 2388.152 kb on - strandat 2388.187 kb on + strandat 2388.260 kb on - strand, within nuoNat 2388.314 kb on + strand, within nuoNat 2388.315 kb on + strand, within nuoNat 2388.320 kb on + strand, within nuoNat 2388.482 kb on + strand, within nuoNat 2388.482 kb on + strand, within nuoNat 2388.545 kb on + strand, within nuoNat 2388.665 kb on - strand, within nuoNat 2388.762 kb on - strand, within nuoNat 2388.773 kb on - strand, within nuoNat 2388.835 kb on + strand, within nuoN

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
remove
2,386,671 - +1.7
2,386,721 - yfbO b2274 0.15 +1.7
2,386,781 - yfbO b2274 0.29 -2.0
2,386,781 - yfbO b2274 0.29 -2.7
2,386,788 - yfbO b2274 0.31 -1.5
2,386,819 + yfbO b2274 0.38 +1.7
2,386,859 - yfbO b2274 0.48 +1.8
2,386,859 - yfbO b2274 0.48 -0.2
2,386,859 - yfbO b2274 0.48 -0.6
2,386,870 - yfbO b2274 0.50 +1.8
2,386,885 - yfbO b2274 0.54 +1.1
2,386,898 - yfbO b2274 0.57 +1.9
2,386,898 - yfbO b2274 0.57 -0.6
2,386,908 - yfbO b2274 0.59 +0.3
2,386,992 - yfbO b2274 0.79 +0.1
2,386,992 - yfbO b2274 0.79 -0.3
2,386,997 + yfbO b2274 0.80 -2.4
2,387,005 - yfbO b2274 0.82 +1.7
2,387,005 - yfbO b2274 0.82 +0.1
2,387,013 + yfbO b2274 0.84 -3.1
2,387,020 + yfbO b2274 0.86 +0.3
2,387,020 + yfbO b2274 0.86 +2.0
2,387,020 + yfbO b2274 0.86 -0.3
2,387,020 + yfbO b2274 0.86 +3.1
2,387,022 + yfbO b2274 0.86 -0.0
2,387,041 + -0.0
2,387,041 + +0.3
2,387,044 + -2.9
2,387,044 + +0.4
2,387,046 + -0.4
2,387,048 + -0.2
2,387,048 - -0.0
2,387,066 - +1.7
2,387,214 + +0.1
2,387,237 + yfbP b2275 0.12 +0.6
2,387,245 - yfbP b2275 0.13 -0.3
2,387,266 + yfbP b2275 0.15 -0.4
2,387,266 + yfbP b2275 0.15 +2.2
2,387,269 - yfbP b2275 0.15 +0.6
2,387,280 + yfbP b2275 0.17 +0.7
2,387,294 - yfbP b2275 0.18 +0.5
2,387,297 + yfbP b2275 0.19 -1.5
2,387,354 + yfbP b2275 0.25 -0.8
2,387,512 + yfbP b2275 0.44 -0.5
2,387,545 - yfbP b2275 0.48 -1.7
2,387,600 - yfbP b2275 0.54 +2.6
2,387,600 - yfbP b2275 0.54 +2.1
2,387,640 + yfbP b2275 0.59 +1.6
2,387,640 + yfbP b2275 0.59 +0.2
2,387,671 + yfbP b2275 0.63 +1.6
2,387,675 + yfbP b2275 0.63 +1.5
2,387,677 + yfbP b2275 0.63 -0.1
2,387,687 - yfbP b2275 0.65 +1.1
2,387,687 - yfbP b2275 0.65 +1.3
2,387,791 + yfbP b2275 0.77 +0.7
2,387,843 - yfbP b2275 0.83 +0.3
2,387,845 + yfbP b2275 0.83 -0.8
2,387,853 - yfbP b2275 0.84 -0.3
2,387,981 + -0.5
2,387,981 + -2.0
2,387,993 + -0.3
2,388,014 - -0.3
2,388,014 - -1.4
2,388,125 - +1.2
2,388,131 - -1.4
2,388,131 - -1.4
2,388,152 - -2.5
2,388,187 + -0.7
2,388,260 - nuoN b2276 0.13 -1.3
2,388,314 + nuoN b2276 0.17 +0.8
2,388,315 + nuoN b2276 0.17 +0.9
2,388,320 + nuoN b2276 0.17 +0.4
2,388,482 + nuoN b2276 0.28 -0.3
2,388,482 + nuoN b2276 0.28 -3.1
2,388,545 + nuoN b2276 0.33 +0.0
2,388,665 - nuoN b2276 0.41 -3.6
2,388,762 - nuoN b2276 0.47 -1.8
2,388,773 - nuoN b2276 0.48 -2.0
2,388,835 + nuoN b2276 0.52 -1.1

Or see this region's nucleotide sequence