Strain Fitness in Escherichia coli BW25113 around b2075

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb2074 and mdtB overlap by 1 nucleotidesmdtB and mdtC are separated by 0 nucleotides b2074: b2074 - putative membrane protein (VIMSS), at 2,152,040 to 2,153,287 b2074 b2075: mdtB - multidrug efflux system, subunit B (NCBI), at 2,153,287 to 2,156,409 mdtB b2076: mdtC - multidrug efflux system, subunit C (NCBI), at 2,156,410 to 2,159,487 mdtC Position (kb) 2153 2154 2155 2156 2157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2152.447 kb on + strand, within b2074at 2152.677 kb on - strand, within b2074at 2152.677 kb on - strand, within b2074at 2152.748 kb on + strand, within b2074at 2152.748 kb on + strand, within b2074at 2153.105 kb on + strand, within b2074at 2153.105 kb on + strand, within b2074at 2153.113 kb on + strand, within b2074at 2153.113 kb on - strand, within b2074at 2153.113 kb on - strand, within b2074at 2153.115 kb on + strand, within b2074at 2153.343 kb on - strandat 2153.359 kb on - strandat 2153.359 kb on - strandat 2153.415 kb on - strandat 2153.471 kb on + strandat 2153.581 kb on + strandat 2153.581 kb on + strandat 2153.695 kb on + strand, within mdtBat 2153.695 kb on + strand, within mdtBat 2153.753 kb on + strand, within mdtBat 2153.753 kb on + strand, within mdtBat 2153.984 kb on + strand, within mdtBat 2154.025 kb on + strand, within mdtBat 2154.086 kb on + strand, within mdtBat 2154.103 kb on - strand, within mdtBat 2154.231 kb on + strand, within mdtBat 2154.240 kb on - strand, within mdtBat 2154.260 kb on + strand, within mdtBat 2154.260 kb on + strand, within mdtBat 2154.419 kb on + strand, within mdtBat 2154.583 kb on + strand, within mdtBat 2154.606 kb on - strand, within mdtBat 2154.606 kb on - strand, within mdtBat 2154.663 kb on + strand, within mdtBat 2154.709 kb on + strand, within mdtBat 2154.863 kb on + strand, within mdtBat 2154.926 kb on - strand, within mdtBat 2155.098 kb on - strand, within mdtBat 2155.135 kb on + strand, within mdtBat 2155.143 kb on - strand, within mdtBat 2155.143 kb on - strand, within mdtBat 2155.213 kb on + strand, within mdtBat 2155.213 kb on + strand, within mdtBat 2155.357 kb on - strand, within mdtBat 2155.480 kb on - strand, within mdtBat 2155.514 kb on - strand, within mdtBat 2155.543 kb on + strand, within mdtBat 2155.550 kb on - strand, within mdtBat 2155.566 kb on - strand, within mdtBat 2155.594 kb on - strand, within mdtBat 2155.630 kb on - strand, within mdtBat 2155.630 kb on - strand, within mdtBat 2155.761 kb on - strand, within mdtBat 2155.885 kb on + strand, within mdtBat 2155.919 kb on + strand, within mdtBat 2156.112 kb on - strandat 2156.167 kb on + strandat 2156.248 kb on - strandat 2156.265 kb on - strandat 2156.330 kb on - strandat 2156.357 kb on + strandat 2156.478 kb on + strandat 2156.511 kb on - strandat 2156.564 kb on + strandat 2156.564 kb on + strandat 2156.991 kb on + strand, within mdtCat 2157.092 kb on - strand, within mdtCat 2157.092 kb on - strand, within mdtCat 2157.158 kb on - strand, within mdtCat 2157.214 kb on - strand, within mdtCat 2157.272 kb on - strand, within mdtCat 2157.330 kb on + strand, within mdtCat 2157.378 kb on + strand, within mdtC

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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2,152,447 + b2074 b2074 0.33 -1.5
2,152,677 - b2074 b2074 0.51 -1.3
2,152,677 - b2074 b2074 0.51 -3.2
2,152,748 + b2074 b2074 0.57 -1.8
2,152,748 + b2074 b2074 0.57 +0.8
2,153,105 + b2074 b2074 0.85 -0.3
2,153,105 + b2074 b2074 0.85 -1.3
2,153,113 + b2074 b2074 0.86 -1.1
2,153,113 - b2074 b2074 0.86 +0.7
2,153,113 - b2074 b2074 0.86 -0.3
2,153,115 + b2074 b2074 0.86 +1.7
2,153,343 - -1.5
2,153,359 - +1.0
2,153,359 - -0.0
2,153,415 - +0.3
2,153,471 + +0.5
2,153,581 + -2.4
2,153,581 + -0.7
2,153,695 + mdtB b2075 0.13 +0.2
2,153,695 + mdtB b2075 0.13 +1.6
2,153,753 + mdtB b2075 0.15 +1.3
2,153,753 + mdtB b2075 0.15 -0.1
2,153,984 + mdtB b2075 0.22 +0.4
2,154,025 + mdtB b2075 0.24 +1.0
2,154,086 + mdtB b2075 0.26 +1.5
2,154,103 - mdtB b2075 0.26 +0.8
2,154,231 + mdtB b2075 0.30 +0.6
2,154,240 - mdtB b2075 0.31 +1.1
2,154,260 + mdtB b2075 0.31 -2.8
2,154,260 + mdtB b2075 0.31 -1.5
2,154,419 + mdtB b2075 0.36 +1.5
2,154,583 + mdtB b2075 0.41 -0.0
2,154,606 - mdtB b2075 0.42 +1.0
2,154,606 - mdtB b2075 0.42 -0.1
2,154,663 + mdtB b2075 0.44 +2.1
2,154,709 + mdtB b2075 0.46 +1.0
2,154,863 + mdtB b2075 0.50 +0.1
2,154,926 - mdtB b2075 0.52 +0.9
2,155,098 - mdtB b2075 0.58 +0.7
2,155,135 + mdtB b2075 0.59 -0.2
2,155,143 - mdtB b2075 0.59 -1.6
2,155,143 - mdtB b2075 0.59 -0.2
2,155,213 + mdtB b2075 0.62 -1.1
2,155,213 + mdtB b2075 0.62 +0.1
2,155,357 - mdtB b2075 0.66 +1.5
2,155,480 - mdtB b2075 0.70 +1.4
2,155,514 - mdtB b2075 0.71 +0.7
2,155,543 + mdtB b2075 0.72 +1.4
2,155,550 - mdtB b2075 0.72 +0.6
2,155,566 - mdtB b2075 0.73 +1.5
2,155,594 - mdtB b2075 0.74 +0.7
2,155,630 - mdtB b2075 0.75 -0.0
2,155,630 - mdtB b2075 0.75 +1.2
2,155,761 - mdtB b2075 0.79 -1.2
2,155,885 + mdtB b2075 0.83 +1.1
2,155,919 + mdtB b2075 0.84 +0.8
2,156,112 - +0.6
2,156,167 + +0.0
2,156,248 - +1.5
2,156,265 - +1.2
2,156,330 - -0.8
2,156,357 + -1.1
2,156,478 + +0.6
2,156,511 - +0.4
2,156,564 + +1.3
2,156,564 + +1.6
2,156,991 + mdtC b2076 0.19 +0.2
2,157,092 - mdtC b2076 0.22 -2.4
2,157,092 - mdtC b2076 0.22 +0.6
2,157,158 - mdtC b2076 0.24 +1.1
2,157,214 - mdtC b2076 0.26 +0.5
2,157,272 - mdtC b2076 0.28 -0.4
2,157,330 + mdtC b2076 0.30 +0.1
2,157,378 + mdtC b2076 0.31 +0.1

Or see this region's nucleotide sequence