Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yniA and yniB are separated by 40 nucleotides yniB and yniC are separated by 146 nucleotides yniC and ydjM are separated by 162 nucleotides ydjM and ydjN are separated by 132 nucleotides
b1725: yniA - predicted phosphotransferase/kinase (NCBI), at 1,805,820 to 1,806,680
yniA
b1726: yniB - predicted inner membrane protein (NCBI), at 1,806,721 to 1,807,257
yniB
b1727: yniC - predicted hydrolase (NCBI), at 1,807,404 to 1,808,072
yniC
b1728: ydjM - predicted inner membrane protein regulated by LexA (RefSeq), at 1,808,235 to 1,808,825
ydjM
b1729: ydjN - predicted transporter (NCBI), at 1,808,958 to 1,810,349
ydjN
Position (kb)
1807
1808
1809 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1806.412 kb on + strand, within yniA at 1806.412 kb on + strand, within yniA at 1806.430 kb on - strand, within yniA at 1806.458 kb on + strand, within yniA at 1806.458 kb on + strand, within yniA at 1806.464 kb on + strand, within yniA at 1806.563 kb on + strand, within yniA at 1806.563 kb on + strand, within yniA at 1806.573 kb on + strand, within yniA at 1806.593 kb on - strand, within yniA at 1806.593 kb on - strand, within yniA at 1806.598 kb on - strand at 1806.599 kb on - strand at 1806.599 kb on - strand at 1806.665 kb on + strand at 1806.684 kb on + strand at 1806.684 kb on + strand at 1806.686 kb on - strand at 1806.686 kb on - strand at 1806.687 kb on - strand at 1806.697 kb on + strand at 1806.772 kb on - strand at 1806.781 kb on + strand, within yniB at 1807.061 kb on + strand, within yniB at 1807.103 kb on - strand, within yniB at 1807.241 kb on + strand at 1807.253 kb on + strand at 1807.288 kb on + strand at 1807.353 kb on + strand at 1807.363 kb on + strand at 1807.387 kb on - strand at 1807.387 kb on - strand at 1807.470 kb on + strand at 1807.489 kb on + strand, within yniC at 1807.867 kb on - strand, within yniC at 1807.904 kb on - strand, within yniC at 1808.090 kb on + strand at 1808.185 kb on - strand at 1808.203 kb on - strand at 1808.359 kb on + strand, within ydjM at 1808.524 kb on - strand, within ydjM at 1808.524 kb on - strand, within ydjM at 1808.679 kb on + strand, within ydjM at 1808.870 kb on + strand at 1808.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction mzaABCDE remove 1,806,412 + yniA b1725 0.69 +1.2 1,806,412 + yniA b1725 0.69 -1.9 1,806,430 - yniA b1725 0.71 -0.8 1,806,458 + yniA b1725 0.74 +0.0 1,806,458 + yniA b1725 0.74 +0.7 1,806,464 + yniA b1725 0.75 -0.8 1,806,563 + yniA b1725 0.86 -1.3 1,806,563 + yniA b1725 0.86 +0.4 1,806,573 + yniA b1725 0.87 +0.9 1,806,593 - yniA b1725 0.90 +0.7 1,806,593 - yniA b1725 0.90 +0.1 1,806,598 - -0.5 1,806,599 - +1.1 1,806,599 - +0.3 1,806,665 + +0.6 1,806,684 + -0.9 1,806,684 + +1.3 1,806,686 - -0.7 1,806,686 - -1.6 1,806,687 - +0.2 1,806,697 + -4.2 1,806,772 - +0.3 1,806,781 + yniB b1726 0.11 +0.3 1,807,061 + yniB b1726 0.63 -1.5 1,807,103 - yniB b1726 0.71 -3.2 1,807,241 + +0.3 1,807,253 + +0.4 1,807,288 + -1.1 1,807,353 + -0.1 1,807,363 + -2.6 1,807,387 - +1.7 1,807,387 - +1.5 1,807,470 + +0.2 1,807,489 + yniC b1727 0.13 +1.2 1,807,867 - yniC b1727 0.69 -0.9 1,807,904 - yniC b1727 0.75 +0.1 1,808,090 + -2.4 1,808,185 - +0.5 1,808,203 - +0.6 1,808,359 + ydjM b1728 0.21 +1.2 1,808,524 - ydjM b1728 0.49 -1.1 1,808,524 - ydjM b1728 0.49 +0.6 1,808,679 + ydjM b1728 0.75 +0.4 1,808,870 + -0.9 1,808,924 - +1.3
Or see this region's nucleotide sequence