Strain Fitness in Escherichia coli BW25113 around b1726

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyniA and yniB are separated by 40 nucleotidesyniB and yniC are separated by 146 nucleotidesyniC and ydjM are separated by 162 nucleotides b1725: yniA - predicted phosphotransferase/kinase (NCBI), at 1,805,820 to 1,806,680 yniA b1726: yniB - predicted inner membrane protein (NCBI), at 1,806,721 to 1,807,257 yniB b1727: yniC - predicted hydrolase (NCBI), at 1,807,404 to 1,808,072 yniC b1728: ydjM - predicted inner membrane protein regulated by LexA (RefSeq), at 1,808,235 to 1,808,825 ydjM Position (kb) 1806 1807 1808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1805.853 kb on + strandat 1805.863 kb on - strandat 1805.863 kb on - strandat 1805.980 kb on - strand, within yniAat 1806.165 kb on - strand, within yniAat 1806.217 kb on - strand, within yniAat 1806.333 kb on + strand, within yniAat 1806.412 kb on + strand, within yniAat 1806.412 kb on + strand, within yniAat 1806.430 kb on - strand, within yniAat 1806.458 kb on + strand, within yniAat 1806.458 kb on + strand, within yniAat 1806.464 kb on + strand, within yniAat 1806.563 kb on + strand, within yniAat 1806.563 kb on + strand, within yniAat 1806.573 kb on + strand, within yniAat 1806.593 kb on - strand, within yniAat 1806.593 kb on - strand, within yniAat 1806.598 kb on - strandat 1806.599 kb on - strandat 1806.599 kb on - strandat 1806.665 kb on + strandat 1806.684 kb on + strandat 1806.684 kb on + strandat 1806.686 kb on - strandat 1806.686 kb on - strandat 1806.687 kb on - strandat 1806.697 kb on + strandat 1806.772 kb on - strandat 1806.781 kb on + strand, within yniBat 1807.061 kb on + strand, within yniBat 1807.103 kb on - strand, within yniBat 1807.241 kb on + strandat 1807.253 kb on + strandat 1807.288 kb on + strandat 1807.353 kb on + strandat 1807.363 kb on + strandat 1807.387 kb on - strandat 1807.387 kb on - strandat 1807.470 kb on + strandat 1807.489 kb on + strand, within yniCat 1807.867 kb on - strand, within yniCat 1807.904 kb on - strand, within yniCat 1808.090 kb on + strandat 1808.185 kb on - strandat 1808.203 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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1,805,853 + -0.9
1,805,863 - +0.3
1,805,863 - +3.5
1,805,980 - yniA b1725 0.19 -0.8
1,806,165 - yniA b1725 0.40 -3.2
1,806,217 - yniA b1725 0.46 -1.2
1,806,333 + yniA b1725 0.60 +0.9
1,806,412 + yniA b1725 0.69 +1.2
1,806,412 + yniA b1725 0.69 -1.9
1,806,430 - yniA b1725 0.71 -0.8
1,806,458 + yniA b1725 0.74 +0.0
1,806,458 + yniA b1725 0.74 +0.7
1,806,464 + yniA b1725 0.75 -0.8
1,806,563 + yniA b1725 0.86 -1.3
1,806,563 + yniA b1725 0.86 +0.4
1,806,573 + yniA b1725 0.87 +0.9
1,806,593 - yniA b1725 0.90 +0.7
1,806,593 - yniA b1725 0.90 +0.1
1,806,598 - -0.5
1,806,599 - +1.1
1,806,599 - +0.3
1,806,665 + +0.6
1,806,684 + -0.9
1,806,684 + +1.3
1,806,686 - -0.7
1,806,686 - -1.6
1,806,687 - +0.2
1,806,697 + -4.2
1,806,772 - +0.3
1,806,781 + yniB b1726 0.11 +0.3
1,807,061 + yniB b1726 0.63 -1.5
1,807,103 - yniB b1726 0.71 -3.2
1,807,241 + +0.3
1,807,253 + +0.4
1,807,288 + -1.1
1,807,353 + -0.1
1,807,363 + -2.6
1,807,387 - +1.7
1,807,387 - +1.5
1,807,470 + +0.2
1,807,489 + yniC b1727 0.13 +1.2
1,807,867 - yniC b1727 0.69 -0.9
1,807,904 - yniC b1727 0.75 +0.1
1,808,090 + -2.4
1,808,185 - +0.5
1,808,203 - +0.6

Or see this region's nucleotide sequence