Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt narY and narZ overlap by 4 nucleotides narZ and narU are separated by 81 nucleotides
b1467: narY - nitrate reductase 2 (NRZ), beta subunit (NCBI), at 1,535,333 to 1,536,877
narY
b1468: narZ - nitrate reductase 2 (NRZ), alpha subunit (NCBI), at 1,536,874 to 1,540,614
narZ
b1469: narU - nitrate/nitrite transporter (NCBI), at 1,540,696 to 1,542,084
narU
Position (kb)
1536
1537
1538
1539
1540
1541 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1535.885 kb on + strand, within narY at 1536.005 kb on - strand, within narY at 1536.005 kb on - strand, within narY at 1536.015 kb on - strand, within narY at 1536.054 kb on + strand, within narY at 1536.316 kb on - strand, within narY at 1536.316 kb on - strand, within narY at 1536.323 kb on + strand, within narY at 1536.895 kb on - strand at 1537.060 kb on - strand at 1537.542 kb on - strand, within narZ at 1537.763 kb on - strand, within narZ at 1537.763 kb on - strand, within narZ at 1537.800 kb on - strand, within narZ at 1537.939 kb on + strand, within narZ at 1537.939 kb on + strand, within narZ at 1538.008 kb on - strand, within narZ at 1538.036 kb on - strand, within narZ at 1538.036 kb on - strand, within narZ at 1538.102 kb on + strand, within narZ at 1538.262 kb on - strand, within narZ at 1538.954 kb on - strand, within narZ at 1539.103 kb on - strand, within narZ at 1539.113 kb on + strand, within narZ at 1539.481 kb on - strand, within narZ at 1539.813 kb on + strand, within narZ at 1539.875 kb on + strand, within narZ at 1539.875 kb on + strand, within narZ at 1539.884 kb on - strand, within narZ at 1540.463 kb on - strand at 1540.622 kb on + strand at 1540.622 kb on + strand at 1540.720 kb on + strand at 1540.790 kb on + strand at 1540.922 kb on + strand, within narU at 1540.922 kb on + strand, within narU at 1541.002 kb on - strand, within narU at 1541.375 kb on - strand, within narU at 1541.375 kb on - strand, within narU at 1541.535 kb on + strand, within narU at 1541.599 kb on + strand, within narU
Per-strain Table
Position Strand Gene LocusTag Fraction mzaABCDE remove 1,535,885 + narY b1467 0.36 +1.0 1,536,005 - narY b1467 0.43 +0.3 1,536,005 - narY b1467 0.43 +0.8 1,536,015 - narY b1467 0.44 +3.3 1,536,054 + narY b1467 0.47 +0.2 1,536,316 - narY b1467 0.64 -1.1 1,536,316 - narY b1467 0.64 -2.1 1,536,323 + narY b1467 0.64 +0.4 1,536,895 - -0.1 1,537,060 - +0.1 1,537,542 - narZ b1468 0.18 +1.3 1,537,763 - narZ b1468 0.24 -0.1 1,537,763 - narZ b1468 0.24 +1.4 1,537,800 - narZ b1468 0.25 +1.2 1,537,939 + narZ b1468 0.28 +1.5 1,537,939 + narZ b1468 0.28 +0.6 1,538,008 - narZ b1468 0.30 +0.3 1,538,036 - narZ b1468 0.31 +1.1 1,538,036 - narZ b1468 0.31 -1.1 1,538,102 + narZ b1468 0.33 +2.0 1,538,262 - narZ b1468 0.37 -0.1 1,538,954 - narZ b1468 0.56 +0.3 1,539,103 - narZ b1468 0.60 +0.4 1,539,113 + narZ b1468 0.60 +0.9 1,539,481 - narZ b1468 0.70 -3.3 1,539,813 + narZ b1468 0.79 +1.7 1,539,875 + narZ b1468 0.80 -0.4 1,539,875 + narZ b1468 0.80 -0.9 1,539,884 - narZ b1468 0.80 +1.6 1,540,463 - -0.2 1,540,622 + -3.0 1,540,622 + +1.2 1,540,720 + +0.7 1,540,790 + -0.5 1,540,922 + narU b1469 0.16 +0.9 1,540,922 + narU b1469 0.16 -0.2 1,541,002 - narU b1469 0.22 +1.4 1,541,375 - narU b1469 0.49 -1.1 1,541,375 - narU b1469 0.49 +1.1 1,541,535 + narU b1469 0.60 +0.4 1,541,599 + narU b1469 0.65 -1.5
Or see this region's nucleotide sequence