Strain Fitness in Escherichia coli BW25113 around b2387

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntypdG and ypdH are separated by 21 nucleotidesypdH and glk are separated by 218 nucleotides b2386: ypdG - predicted enzyme IIC component of PTS (NCBI), at 2,504,669 to 2,505,916 ypdG b2387: ypdH - predicted enzyme IIB component of PTS (NCBI), at 2,505,938 to 2,506,264 ypdH b2388: glk - glucokinase (NCBI), at 2,506,483 to 2,507,448 glk Position (kb) 2505 2506 2507Strain fitness (log2 ratio) -2 -1 0 1 2at 2504.967 kb on + strand, within ypdGat 2504.967 kb on + strand, within ypdGat 2505.076 kb on + strand, within ypdGat 2505.092 kb on - strand, within ypdGat 2505.107 kb on + strand, within ypdGat 2505.145 kb on - strand, within ypdGat 2505.243 kb on + strand, within ypdGat 2505.350 kb on - strand, within ypdGat 2505.408 kb on - strand, within ypdGat 2505.468 kb on - strand, within ypdGat 2505.473 kb on - strand, within ypdGat 2505.504 kb on - strand, within ypdGat 2505.639 kb on + strand, within ypdGat 2505.648 kb on - strand, within ypdGat 2505.648 kb on - strand, within ypdGat 2505.672 kb on + strand, within ypdGat 2505.719 kb on + strand, within ypdGat 2505.719 kb on + strand, within ypdGat 2505.787 kb on + strand, within ypdGat 2505.885 kb on - strandat 2505.919 kb on + strandat 2505.927 kb on - strandat 2505.927 kb on - strandat 2505.949 kb on + strandat 2505.954 kb on - strandat 2505.954 kb on - strandat 2506.086 kb on - strand, within ypdHat 2506.086 kb on - strand, within ypdHat 2506.096 kb on + strand, within ypdHat 2506.129 kb on - strand, within ypdHat 2506.201 kb on - strand, within ypdHat 2506.212 kb on - strand, within ypdHat 2506.219 kb on - strand, within ypdHat 2506.225 kb on - strand, within ypdHat 2506.225 kb on - strand, within ypdHat 2506.286 kb on + strandat 2506.294 kb on - strandat 2506.370 kb on + strandat 2506.386 kb on - strandat 2506.393 kb on + strandat 2506.393 kb on + strandat 2506.428 kb on + strandat 2506.578 kb on - strandat 2506.646 kb on - strand, within glkat 2506.646 kb on - strand, within glkat 2506.731 kb on - strand, within glkat 2506.731 kb on - strand, within glkat 2506.780 kb on - strand, within glkat 2506.800 kb on - strand, within glkat 2506.861 kb on - strand, within glkat 2506.866 kb on + strand, within glkat 2507.004 kb on + strand, within glkat 2507.004 kb on + strand, within glkat 2507.022 kb on + strand, within glkat 2507.057 kb on + strand, within glkat 2507.185 kb on + strand, within glkat 2507.215 kb on + strand, within glk

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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2,504,967 + ypdG b2386 0.24 -0.3
2,504,967 + ypdG b2386 0.24 -0.2
2,505,076 + ypdG b2386 0.33 -2.0
2,505,092 - ypdG b2386 0.34 +1.1
2,505,107 + ypdG b2386 0.35 +0.6
2,505,145 - ypdG b2386 0.38 -0.4
2,505,243 + ypdG b2386 0.46 +0.9
2,505,350 - ypdG b2386 0.55 +1.0
2,505,408 - ypdG b2386 0.59 +0.2
2,505,468 - ypdG b2386 0.64 +0.7
2,505,473 - ypdG b2386 0.64 +1.1
2,505,504 - ypdG b2386 0.67 +0.7
2,505,639 + ypdG b2386 0.78 +0.9
2,505,648 - ypdG b2386 0.78 +1.7
2,505,648 - ypdG b2386 0.78 +1.7
2,505,672 + ypdG b2386 0.80 -0.2
2,505,719 + ypdG b2386 0.84 +1.0
2,505,719 + ypdG b2386 0.84 +1.9
2,505,787 + ypdG b2386 0.90 +1.7
2,505,885 - +1.1
2,505,919 + +0.8
2,505,927 - +0.5
2,505,927 - +1.2
2,505,949 + +1.2
2,505,954 - +0.4
2,505,954 - -0.5
2,506,086 - ypdH b2387 0.45 +1.6
2,506,086 - ypdH b2387 0.45 +1.0
2,506,096 + ypdH b2387 0.48 +0.8
2,506,129 - ypdH b2387 0.58 -0.2
2,506,201 - ypdH b2387 0.80 +0.5
2,506,212 - ypdH b2387 0.84 +0.9
2,506,219 - ypdH b2387 0.86 +2.4
2,506,225 - ypdH b2387 0.88 -0.6
2,506,225 - ypdH b2387 0.88 -0.3
2,506,286 + +0.1
2,506,294 - +0.2
2,506,370 + +0.4
2,506,386 - -0.0
2,506,393 + +0.8
2,506,393 + -0.1
2,506,428 + -1.0
2,506,578 - -0.5
2,506,646 - glk b2388 0.17 +0.6
2,506,646 - glk b2388 0.17 +1.2
2,506,731 - glk b2388 0.26 +1.6
2,506,731 - glk b2388 0.26 +0.2
2,506,780 - glk b2388 0.31 -2.0
2,506,800 - glk b2388 0.33 -0.0
2,506,861 - glk b2388 0.39 +0.2
2,506,866 + glk b2388 0.40 -0.5
2,507,004 + glk b2388 0.54 -0.9
2,507,004 + glk b2388 0.54 -1.6
2,507,022 + glk b2388 0.56 +1.1
2,507,057 + glk b2388 0.59 -0.3
2,507,185 + glk b2388 0.73 -1.0
2,507,215 + glk b2388 0.76 -1.0

Or see this region's nucleotide sequence