Experiment: mzaABCDE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napH and napG overlap by 14 nucleotides napG and napA are separated by 6 nucleotides napA and napD overlap by 4 nucleotides napD and napF overlap by 11 nucleotides napF and yojO are separated by 108 nucleotides
b2204: napH - quinol dehydrogenase membrane component (NCBI), at 2,296,737 to 2,297,600
napH
b2205: napG - quinol dehydrogenase periplasmic component (NCBI), at 2,297,587 to 2,298,282
napG
b2206: napA - nitrate reductase, periplasmic, large subunit (NCBI), at 2,298,289 to 2,300,775
napA
b2207: napD - assembly protein for periplasmic nitrate reductase (NCBI), at 2,300,772 to 2,301,035
napD
b2208: napF - ferredoxin-type protein, predicted role in electron transfer to periplasmic nitrate reductase (NapA) (NCBI), at 2,301,025 to 2,301,519
napF
b4604: yojO - hypothetical protein (RefSeq), at 2,301,628 to 2,301,792
yojO
Position (kb)
2298
2299
2300
2301 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2297.341 kb on + strand, within napH at 2297.444 kb on - strand, within napH at 2297.464 kb on + strand, within napH at 2297.476 kb on - strand, within napH at 2297.476 kb on - strand, within napH at 2297.517 kb on + strand at 2297.535 kb on - strand at 2297.535 kb on - strand at 2297.585 kb on - strand at 2297.585 kb on - strand at 2297.615 kb on - strand at 2297.676 kb on - strand, within napG at 2297.791 kb on + strand, within napG at 2297.798 kb on + strand, within napG at 2297.949 kb on + strand, within napG at 2297.953 kb on - strand, within napG at 2298.068 kb on + strand, within napG at 2298.073 kb on + strand, within napG at 2298.161 kb on - strand, within napG at 2298.190 kb on + strand, within napG at 2298.194 kb on + strand, within napG at 2298.340 kb on - strand at 2298.340 kb on - strand at 2298.469 kb on + strand at 2298.562 kb on + strand, within napA at 2298.565 kb on + strand, within napA at 2298.570 kb on - strand, within napA at 2298.572 kb on + strand, within napA at 2298.578 kb on - strand, within napA at 2298.582 kb on + strand, within napA at 2298.582 kb on + strand, within napA at 2298.604 kb on - strand, within napA at 2298.604 kb on - strand, within napA at 2298.790 kb on + strand, within napA at 2298.882 kb on - strand, within napA at 2298.981 kb on + strand, within napA at 2298.981 kb on + strand, within napA at 2298.983 kb on + strand, within napA at 2298.983 kb on + strand, within napA at 2299.128 kb on + strand, within napA at 2299.128 kb on + strand, within napA at 2299.139 kb on + strand, within napA at 2299.195 kb on + strand, within napA at 2299.195 kb on + strand, within napA at 2299.267 kb on - strand, within napA at 2299.299 kb on + strand, within napA at 2299.299 kb on + strand, within napA at 2299.342 kb on - strand, within napA at 2299.381 kb on + strand, within napA at 2299.467 kb on + strand, within napA at 2299.503 kb on + strand, within napA at 2299.503 kb on + strand, within napA at 2299.519 kb on - strand, within napA at 2299.519 kb on - strand, within napA at 2299.679 kb on + strand, within napA at 2299.697 kb on + strand, within napA at 2299.697 kb on + strand, within napA at 2299.817 kb on - strand, within napA at 2299.859 kb on + strand, within napA at 2300.072 kb on + strand, within napA at 2300.072 kb on + strand, within napA at 2300.114 kb on + strand, within napA at 2300.239 kb on + strand, within napA at 2300.240 kb on - strand, within napA at 2300.245 kb on - strand, within napA at 2300.338 kb on + strand, within napA at 2300.365 kb on + strand, within napA at 2300.365 kb on + strand, within napA at 2300.421 kb on - strand, within napA at 2300.421 kb on - strand, within napA at 2300.605 kb on + strand at 2300.832 kb on + strand, within napD at 2300.841 kb on + strand, within napD at 2300.865 kb on - strand, within napD at 2300.965 kb on + strand, within napD at 2301.037 kb on + strand at 2301.037 kb on + strand at 2301.060 kb on + strand at 2301.060 kb on + strand at 2301.084 kb on + strand, within napF at 2301.183 kb on - strand, within napF at 2301.210 kb on - strand, within napF at 2301.210 kb on - strand, within napF at 2301.256 kb on - strand, within napF at 2301.257 kb on - strand, within napF at 2301.286 kb on + strand, within napF at 2301.415 kb on - strand, within napF at 2301.496 kb on - strand at 2301.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction mzaABCDE remove 2,297,341 + napH b2204 0.70 -1.8 2,297,444 - napH b2204 0.82 -0.3 2,297,464 + napH b2204 0.84 +0.7 2,297,476 - napH b2204 0.86 +0.1 2,297,476 - napH b2204 0.86 +2.3 2,297,517 + +0.9 2,297,535 - -0.0 2,297,535 - -0.8 2,297,585 - +1.3 2,297,585 - +0.3 2,297,615 - +0.6 2,297,676 - napG b2205 0.13 -0.0 2,297,791 + napG b2205 0.29 -0.3 2,297,798 + napG b2205 0.30 -4.9 2,297,949 + napG b2205 0.52 -1.0 2,297,953 - napG b2205 0.53 +1.5 2,298,068 + napG b2205 0.69 -1.0 2,298,073 + napG b2205 0.70 +1.3 2,298,161 - napG b2205 0.82 +0.3 2,298,190 + napG b2205 0.87 -0.8 2,298,194 + napG b2205 0.87 -1.1 2,298,340 - +0.6 2,298,340 - +0.1 2,298,469 + +0.3 2,298,562 + napA b2206 0.11 +0.4 2,298,565 + napA b2206 0.11 +0.7 2,298,570 - napA b2206 0.11 -0.5 2,298,572 + napA b2206 0.11 -0.3 2,298,578 - napA b2206 0.12 +1.3 2,298,582 + napA b2206 0.12 +0.2 2,298,582 + napA b2206 0.12 +0.6 2,298,604 - napA b2206 0.13 -0.6 2,298,604 - napA b2206 0.13 +0.8 2,298,790 + napA b2206 0.20 +0.3 2,298,882 - napA b2206 0.24 -0.3 2,298,981 + napA b2206 0.28 +1.6 2,298,981 + napA b2206 0.28 +1.1 2,298,983 + napA b2206 0.28 -0.1 2,298,983 + napA b2206 0.28 -2.3 2,299,128 + napA b2206 0.34 +1.0 2,299,128 + napA b2206 0.34 -1.5 2,299,139 + napA b2206 0.34 -0.2 2,299,195 + napA b2206 0.36 +0.3 2,299,195 + napA b2206 0.36 +0.2 2,299,267 - napA b2206 0.39 -1.3 2,299,299 + napA b2206 0.41 -0.4 2,299,299 + napA b2206 0.41 +0.6 2,299,342 - napA b2206 0.42 +0.5 2,299,381 + napA b2206 0.44 -0.4 2,299,467 + napA b2206 0.47 +0.4 2,299,503 + napA b2206 0.49 +0.7 2,299,503 + napA b2206 0.49 -0.7 2,299,519 - napA b2206 0.49 +0.9 2,299,519 - napA b2206 0.49 -1.7 2,299,679 + napA b2206 0.56 -0.1 2,299,697 + napA b2206 0.57 -0.3 2,299,697 + napA b2206 0.57 -0.6 2,299,817 - napA b2206 0.61 -0.4 2,299,859 + napA b2206 0.63 +2.4 2,300,072 + napA b2206 0.72 +0.4 2,300,072 + napA b2206 0.72 -0.6 2,300,114 + napA b2206 0.73 +1.8 2,300,239 + napA b2206 0.78 +0.0 2,300,240 - napA b2206 0.78 +1.7 2,300,245 - napA b2206 0.79 +1.6 2,300,338 + napA b2206 0.82 -0.6 2,300,365 + napA b2206 0.83 +0.8 2,300,365 + napA b2206 0.83 +0.7 2,300,421 - napA b2206 0.86 +0.7 2,300,421 - napA b2206 0.86 +1.0 2,300,605 + -4.0 2,300,832 + napD b2207 0.23 +0.8 2,300,841 + napD b2207 0.26 +0.1 2,300,865 - napD b2207 0.35 -1.4 2,300,965 + napD b2207 0.73 +0.5 2,301,037 + +1.6 2,301,037 + +0.9 2,301,060 + +1.9 2,301,060 + +0.0 2,301,084 + napF b2208 0.12 +1.4 2,301,183 - napF b2208 0.32 -0.1 2,301,210 - napF b2208 0.37 +0.7 2,301,210 - napF b2208 0.37 +1.7 2,301,256 - napF b2208 0.47 +0.3 2,301,257 - napF b2208 0.47 +0.4 2,301,286 + napF b2208 0.53 -0.2 2,301,415 - napF b2208 0.79 -0.4 2,301,496 - -0.4 2,301,620 + -1.6
Or see this region's nucleotide sequence