Strain Fitness in Escherichia coli BW25113 around b1724

Experiment: mzaABCDE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpfkB and ydiZ are separated by 100 nucleotidesydiZ and yniA are separated by 105 nucleotides b1723: pfkB - 6-phosphofructokinase II; suppressor of pfkA (VIMSS), at 1,804,394 to 1,805,323 pfkB b1724: ydiZ - hypothetical protein (NCBI), at 1,805,424 to 1,805,714 ydiZ b1725: yniA - predicted phosphotransferase/kinase (NCBI), at 1,805,820 to 1,806,680 yniA Position (kb) 1805 1806Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1804.490 kb on - strand, within pfkBat 1804.501 kb on - strand, within pfkBat 1804.635 kb on + strand, within pfkBat 1804.635 kb on + strand, within pfkBat 1804.785 kb on + strand, within pfkBat 1804.911 kb on + strand, within pfkBat 1804.911 kb on + strand, within pfkBat 1804.911 kb on + strand, within pfkBat 1805.063 kb on + strand, within pfkBat 1805.063 kb on + strand, within pfkBat 1805.077 kb on - strand, within pfkBat 1805.136 kb on - strand, within pfkBat 1805.145 kb on + strand, within pfkBat 1805.355 kb on + strandat 1805.471 kb on - strand, within ydiZat 1805.648 kb on - strand, within ydiZat 1805.853 kb on + strandat 1805.863 kb on - strandat 1805.863 kb on - strandat 1805.980 kb on - strand, within yniAat 1806.165 kb on - strand, within yniAat 1806.217 kb on - strand, within yniAat 1806.333 kb on + strand, within yniAat 1806.412 kb on + strand, within yniAat 1806.412 kb on + strand, within yniAat 1806.430 kb on - strand, within yniAat 1806.458 kb on + strand, within yniAat 1806.458 kb on + strand, within yniAat 1806.464 kb on + strand, within yniAat 1806.563 kb on + strand, within yniAat 1806.563 kb on + strand, within yniAat 1806.573 kb on + strand, within yniAat 1806.593 kb on - strand, within yniAat 1806.593 kb on - strand, within yniAat 1806.598 kb on - strandat 1806.599 kb on - strandat 1806.599 kb on - strandat 1806.665 kb on + strandat 1806.684 kb on + strandat 1806.684 kb on + strandat 1806.686 kb on - strandat 1806.686 kb on - strandat 1806.687 kb on - strandat 1806.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mzaABCDE
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1,804,490 - pfkB b1723 0.10 -0.9
1,804,501 - pfkB b1723 0.12 +0.6
1,804,635 + pfkB b1723 0.26 -1.1
1,804,635 + pfkB b1723 0.26 +0.7
1,804,785 + pfkB b1723 0.42 +0.6
1,804,911 + pfkB b1723 0.56 +1.0
1,804,911 + pfkB b1723 0.56 -0.4
1,804,911 + pfkB b1723 0.56 +1.1
1,805,063 + pfkB b1723 0.72 -0.2
1,805,063 + pfkB b1723 0.72 -1.9
1,805,077 - pfkB b1723 0.73 +0.8
1,805,136 - pfkB b1723 0.80 -0.4
1,805,145 + pfkB b1723 0.81 -0.5
1,805,355 + +0.3
1,805,471 - ydiZ b1724 0.16 -1.1
1,805,648 - ydiZ b1724 0.77 -1.4
1,805,853 + -1.9
1,805,863 - +1.3
1,805,863 - -0.3
1,805,980 - yniA b1725 0.19 -0.0
1,806,165 - yniA b1725 0.40 -0.6
1,806,217 - yniA b1725 0.46 -0.7
1,806,333 + yniA b1725 0.60 +0.2
1,806,412 + yniA b1725 0.69 +0.3
1,806,412 + yniA b1725 0.69 -1.9
1,806,430 - yniA b1725 0.71 -0.1
1,806,458 + yniA b1725 0.74 -1.0
1,806,458 + yniA b1725 0.74 -2.5
1,806,464 + yniA b1725 0.75 -0.7
1,806,563 + yniA b1725 0.86 -0.9
1,806,563 + yniA b1725 0.86 -0.5
1,806,573 + yniA b1725 0.87 +1.3
1,806,593 - yniA b1725 0.90 -0.4
1,806,593 - yniA b1725 0.90 -1.2
1,806,598 - -3.9
1,806,599 - +0.8
1,806,599 - +0.2
1,806,665 + +1.1
1,806,684 + -0.7
1,806,684 + +1.1
1,806,686 - -0.7
1,806,686 - -1.0
1,806,687 - +1.0
1,806,697 + +0.4

Or see this region's nucleotide sequence