Strain Fitness in Escherichia coli BW25113 around b2167

Experiment: ppI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyeiC and fruA are separated by 422 nucleotidesfruA and fruK are separated by 16 nucleotidesfruK and fruB overlap by 1 nucleotides b2166: yeiC - predicted kinase (NCBI), at 2,256,377 to 2,257,318 yeiC b2167: fruA - fused fructose-specific PTS enzymes: IIBcomponent/IIC components (NCBI), at 2,257,741 to 2,259,432 fruA b2168: fruK - 1-phosphofructokinase (NCBI), at 2,259,449 to 2,260,387 fruK b2169: fruB - fused fructose-specific PTS enzymes: IIA component/HPr component (NCBI), at 2,260,387 to 2,261,517 fruB Position (kb) 2257 2258 2259 2260Strain fitness (log2 ratio) -3 -2 -1 0 1at 2256.745 kb on - strand, within yeiCat 2256.762 kb on + strand, within yeiCat 2256.769 kb on - strand, within yeiCat 2256.782 kb on + strand, within yeiCat 2256.791 kb on + strand, within yeiCat 2256.809 kb on + strand, within yeiCat 2256.838 kb on + strand, within yeiCat 2256.843 kb on + strand, within yeiCat 2256.858 kb on + strand, within yeiCat 2256.869 kb on + strand, within yeiCat 2256.888 kb on + strand, within yeiCat 2256.888 kb on + strand, within yeiCat 2256.920 kb on - strand, within yeiCat 2256.937 kb on + strand, within yeiCat 2257.064 kb on - strand, within yeiCat 2257.105 kb on - strand, within yeiCat 2257.105 kb on - strand, within yeiCat 2257.109 kb on - strand, within yeiCat 2257.121 kb on - strand, within yeiCat 2257.165 kb on - strand, within yeiCat 2257.182 kb on + strand, within yeiCat 2257.182 kb on + strand, within yeiCat 2257.200 kb on - strand, within yeiCat 2257.200 kb on - strand, within yeiCat 2257.200 kb on - strand, within yeiCat 2257.309 kb on - strandat 2257.333 kb on - strandat 2257.333 kb on - strandat 2257.368 kb on - strandat 2257.368 kb on - strandat 2257.402 kb on - strandat 2257.413 kb on - strandat 2257.414 kb on + strandat 2257.428 kb on - strandat 2257.433 kb on - strandat 2257.433 kb on - strandat 2257.481 kb on - strandat 2257.483 kb on + strandat 2257.549 kb on - strandat 2257.549 kb on - strandat 2257.549 kb on - strandat 2257.554 kb on - strandat 2257.591 kb on - strandat 2257.597 kb on - strandat 2257.597 kb on - strandat 2257.633 kb on + strandat 2257.734 kb on - strandat 2257.748 kb on + strandat 2257.748 kb on + strandat 2257.795 kb on - strandat 2257.832 kb on + strandat 2257.893 kb on - strandat 2257.901 kb on - strandat 2257.965 kb on - strand, within fruAat 2257.970 kb on - strand, within fruAat 2257.970 kb on - strand, within fruAat 2258.157 kb on + strand, within fruAat 2258.157 kb on + strand, within fruAat 2258.170 kb on - strand, within fruAat 2258.220 kb on - strand, within fruAat 2258.220 kb on - strand, within fruAat 2258.402 kb on + strand, within fruAat 2258.408 kb on - strand, within fruAat 2258.408 kb on - strand, within fruAat 2258.408 kb on - strand, within fruAat 2258.408 kb on - strand, within fruAat 2258.410 kb on - strand, within fruAat 2258.450 kb on + strand, within fruAat 2258.529 kb on - strand, within fruAat 2258.529 kb on - strand, within fruAat 2258.661 kb on + strand, within fruAat 2258.756 kb on - strand, within fruAat 2258.760 kb on - strand, within fruAat 2258.845 kb on - strand, within fruAat 2258.893 kb on - strand, within fruAat 2258.970 kb on + strand, within fruAat 2259.012 kb on + strand, within fruAat 2259.089 kb on - strand, within fruAat 2259.089 kb on - strand, within fruAat 2259.094 kb on - strand, within fruAat 2259.106 kb on + strand, within fruAat 2259.184 kb on + strand, within fruAat 2259.184 kb on + strand, within fruAat 2259.197 kb on + strand, within fruAat 2259.215 kb on - strand, within fruAat 2259.380 kb on + strandat 2259.507 kb on + strandat 2259.951 kb on - strand, within fruKat 2260.134 kb on + strand, within fruKat 2260.153 kb on + strand, within fruKat 2260.398 kb on + strandat 2260.398 kb on + strandat 2260.412 kb on - strandat 2260.416 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ppI
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2,256,745 - yeiC b2166 0.39 -0.1
2,256,762 + yeiC b2166 0.41 +0.8
2,256,769 - yeiC b2166 0.42 -0.8
2,256,782 + yeiC b2166 0.43 -1.0
2,256,791 + yeiC b2166 0.44 -3.5
2,256,809 + yeiC b2166 0.46 +0.1
2,256,838 + yeiC b2166 0.49 -1.0
2,256,843 + yeiC b2166 0.49 -1.3
2,256,858 + yeiC b2166 0.51 +0.3
2,256,869 + yeiC b2166 0.52 -0.3
2,256,888 + yeiC b2166 0.54 -2.0
2,256,888 + yeiC b2166 0.54 -0.5
2,256,920 - yeiC b2166 0.58 +1.3
2,256,937 + yeiC b2166 0.59 -0.7
2,257,064 - yeiC b2166 0.73 +0.1
2,257,105 - yeiC b2166 0.77 -0.4
2,257,105 - yeiC b2166 0.77 +0.5
2,257,109 - yeiC b2166 0.78 -0.4
2,257,121 - yeiC b2166 0.79 +1.1
2,257,165 - yeiC b2166 0.84 -2.5
2,257,182 + yeiC b2166 0.85 +1.3
2,257,182 + yeiC b2166 0.85 +1.3
2,257,200 - yeiC b2166 0.87 -0.7
2,257,200 - yeiC b2166 0.87 -0.3
2,257,200 - yeiC b2166 0.87 -0.9
2,257,309 - -0.6
2,257,333 - +0.4
2,257,333 - -2.0
2,257,368 - +0.6
2,257,368 - +0.8
2,257,402 - -0.8
2,257,413 - -1.0
2,257,414 + +1.3
2,257,428 - -1.1
2,257,433 - +0.3
2,257,433 - -0.3
2,257,481 - +0.6
2,257,483 + +0.5
2,257,549 - +0.1
2,257,549 - +0.2
2,257,549 - -0.6
2,257,554 - +1.7
2,257,591 - +0.2
2,257,597 - -0.5
2,257,597 - -1.3
2,257,633 + -0.0
2,257,734 - +0.3
2,257,748 + -2.6
2,257,748 + -0.7
2,257,795 - -0.3
2,257,832 + -0.0
2,257,893 - -0.9
2,257,901 - -1.6
2,257,965 - fruA b2167 0.13 +0.5
2,257,970 - fruA b2167 0.14 -2.4
2,257,970 - fruA b2167 0.14 +0.0
2,258,157 + fruA b2167 0.25 -2.8
2,258,157 + fruA b2167 0.25 +0.3
2,258,170 - fruA b2167 0.25 -0.6
2,258,220 - fruA b2167 0.28 -0.8
2,258,220 - fruA b2167 0.28 -0.1
2,258,402 + fruA b2167 0.39 -0.3
2,258,408 - fruA b2167 0.39 -1.2
2,258,408 - fruA b2167 0.39 -0.2
2,258,408 - fruA b2167 0.39 -0.5
2,258,408 - fruA b2167 0.39 +0.1
2,258,410 - fruA b2167 0.40 -2.8
2,258,450 + fruA b2167 0.42 -1.1
2,258,529 - fruA b2167 0.47 +0.2
2,258,529 - fruA b2167 0.47 -1.1
2,258,661 + fruA b2167 0.54 -0.2
2,258,756 - fruA b2167 0.60 -1.0
2,258,760 - fruA b2167 0.60 -0.3
2,258,845 - fruA b2167 0.65 +0.7
2,258,893 - fruA b2167 0.68 -1.1
2,258,970 + fruA b2167 0.73 -0.5
2,259,012 + fruA b2167 0.75 -0.4
2,259,089 - fruA b2167 0.80 -0.6
2,259,089 - fruA b2167 0.80 -1.1
2,259,094 - fruA b2167 0.80 -1.5
2,259,106 + fruA b2167 0.81 +0.1
2,259,184 + fruA b2167 0.85 +0.0
2,259,184 + fruA b2167 0.85 -0.5
2,259,197 + fruA b2167 0.86 +0.2
2,259,215 - fruA b2167 0.87 -0.5
2,259,380 + +0.1
2,259,507 + -0.3
2,259,951 - fruK b2168 0.53 -0.2
2,260,134 + fruK b2168 0.73 -0.4
2,260,153 + fruK b2168 0.75 +0.7
2,260,398 + +1.3
2,260,398 + -0.3
2,260,412 - +0.6
2,260,416 - -0.1

Or see this region's nucleotide sequence