Strain Fitness in Escherichia coli BW25113 around b2843
Experiment: DRT_type_3
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | DRT_type_3 |
---|---|---|---|---|---|
remove | |||||
2,980,468 | - | +1.0 | |||
2,980,477 | - | +0.2 | |||
2,980,489 | + | +0.5 | |||
2,980,491 | - | -0.1 | |||
2,980,497 | - | -0.4 | |||
2,980,497 | - | +1.0 | |||
2,980,497 | - | +0.1 | |||
2,980,497 | - | -0.8 | |||
2,980,545 | + | -0.7 | |||
2,980,547 | + | +2.0 | |||
2,980,550 | - | +0.2 | |||
2,980,550 | - | +0.4 | |||
2,980,552 | + | +0.0 | |||
2,980,553 | + | -1.6 | |||
2,980,553 | - | +0.2 | |||
2,980,559 | - | +0.2 | |||
2,980,559 | - | -0.3 | |||
2,980,560 | - | -0.1 | |||
2,980,561 | - | +0.1 | |||
2,980,586 | + | -1.9 | |||
2,980,604 | - | kduD | b2842 | 0.11 | +0.5 |
2,980,609 | + | kduD | b2842 | 0.12 | -0.6 |
2,980,609 | + | kduD | b2842 | 0.12 | +0.1 |
2,980,633 | - | kduD | b2842 | 0.15 | +0.2 |
2,980,656 | - | kduD | b2842 | 0.18 | +0.9 |
2,980,709 | + | kduD | b2842 | 0.25 | -0.1 |
2,980,740 | - | kduD | b2842 | 0.29 | -0.3 |
2,980,805 | + | kduD | b2842 | 0.38 | -0.2 |
2,980,805 | + | kduD | b2842 | 0.38 | -0.6 |
2,980,805 | + | kduD | b2842 | 0.38 | -0.2 |
2,980,805 | + | kduD | b2842 | 0.38 | +1.0 |
2,980,813 | - | kduD | b2842 | 0.39 | -0.2 |
2,980,881 | + | kduD | b2842 | 0.48 | -0.3 |
2,980,884 | - | kduD | b2842 | 0.48 | +0.8 |
2,980,884 | - | kduD | b2842 | 0.48 | +0.2 |
2,980,904 | + | kduD | b2842 | 0.51 | -0.4 |
2,980,904 | + | kduD | b2842 | 0.51 | +1.0 |
2,980,910 | + | kduD | b2842 | 0.51 | +0.3 |
2,980,974 | + | kduD | b2842 | 0.60 | -0.9 |
2,980,974 | + | kduD | b2842 | 0.60 | +1.1 |
2,981,016 | + | kduD | b2842 | 0.65 | +0.7 |
2,981,050 | + | kduD | b2842 | 0.70 | +0.9 |
2,981,058 | - | kduD | b2842 | 0.71 | +0.9 |
2,981,058 | - | kduD | b2842 | 0.71 | +0.4 |
2,981,113 | + | kduD | b2842 | 0.78 | -0.8 |
2,981,120 | + | kduD | b2842 | 0.79 | +0.5 |
2,981,133 | - | kduD | b2842 | 0.81 | -0.1 |
2,981,202 | - | kduD | b2842 | 0.90 | +0.4 |
2,981,206 | + | +0.5 | |||
2,981,215 | - | -0.4 | |||
2,981,225 | - | +0.1 | |||
2,981,225 | - | -0.2 | |||
2,981,239 | - | -1.0 | |||
2,981,239 | - | +0.2 | |||
2,981,424 | + | kduI | b2843 | 0.14 | -0.8 |
2,981,434 | + | kduI | b2843 | 0.15 | -0.4 |
2,981,457 | - | kduI | b2843 | 0.18 | -1.4 |
2,981,574 | - | kduI | b2843 | 0.32 | +0.5 |
2,981,574 | - | kduI | b2843 | 0.32 | +1.2 |
2,981,636 | - | kduI | b2843 | 0.39 | -0.4 |
2,981,636 | - | kduI | b2843 | 0.39 | -1.0 |
2,981,674 | + | kduI | b2843 | 0.43 | -1.1 |
2,981,695 | - | kduI | b2843 | 0.46 | +0.1 |
2,981,797 | - | kduI | b2843 | 0.58 | +0.0 |
2,981,857 | + | kduI | b2843 | 0.65 | -0.1 |
2,981,857 | + | kduI | b2843 | 0.65 | -0.5 |
2,981,857 | + | kduI | b2843 | 0.65 | -0.2 |
2,981,932 | - | kduI | b2843 | 0.74 | +0.8 |
2,981,936 | + | kduI | b2843 | 0.75 | +0.3 |
2,981,936 | + | kduI | b2843 | 0.75 | +0.6 |
2,981,960 | + | kduI | b2843 | 0.78 | -1.4 |
2,982,001 | - | kduI | b2843 | 0.83 | -0.8 |
2,982,034 | + | kduI | b2843 | 0.86 | -1.7 |
2,982,035 | - | kduI | b2843 | 0.87 | -1.7 |
2,982,036 | - | kduI | b2843 | 0.87 | -0.3 |
2,982,039 | + | kduI | b2843 | 0.87 | +1.3 |
2,982,039 | + | kduI | b2843 | 0.87 | -0.2 |
2,982,040 | + | kduI | b2843 | 0.87 | +0.3 |
2,982,040 | - | kduI | b2843 | 0.87 | -1.3 |
2,982,045 | - | kduI | b2843 | 0.88 | +1.1 |
2,982,050 | - | kduI | b2843 | 0.88 | -1.9 |
2,982,089 | + | -0.7 | |||
2,982,097 | - | -0.5 | |||
2,982,106 | + | +0.1 | |||
2,982,121 | + | +0.5 | |||
2,982,123 | + | -0.5 | |||
2,982,123 | + | +0.8 | |||
2,982,123 | + | +0.6 | |||
2,982,123 | + | +0.3 | |||
2,982,129 | + | +0.4 | |||
2,982,129 | - | +0.5 | |||
2,982,129 | - | -0.1 | |||
2,982,129 | - | +0.3 | |||
2,982,131 | - | -0.2 | |||
2,982,132 | + | -0.3 | |||
2,982,134 | + | +0.5 | |||
2,982,134 | + | +0.4 | |||
2,982,134 | + | +0.8 | |||
2,982,134 | + | +0.8 | |||
2,982,139 | - | -1.5 | |||
2,982,142 | - | +1.5 | |||
2,982,142 | - | +0.8 | |||
2,982,144 | + | -0.6 | |||
2,982,154 | + | +0.3 | |||
2,982,163 | - | +1.1 | |||
2,982,365 | - | +1.0 | |||
2,982,365 | - | -0.3 | |||
2,982,365 | - | +0.4 | |||
2,982,365 | - | -0.3 | |||
2,982,414 | - | -0.6 | |||
2,982,414 | - | +0.6 | |||
2,982,422 | - | -0.6 | |||
2,982,422 | - | +0.3 | |||
2,982,433 | - | +0.6 | |||
2,982,447 | - | -0.6 | |||
2,982,456 | + | -0.4 | |||
2,982,456 | + | -1.6 | |||
2,982,466 | - | -1.2 | |||
2,982,471 | - | -0.6 | |||
2,982,472 | - | +0.3 | |||
2,982,538 | + | +0.2 | |||
2,982,585 | + | yqeF | b2844 | 0.13 | -0.0 |
2,982,585 | + | yqeF | b2844 | 0.13 | +0.2 |
2,982,592 | + | yqeF | b2844 | 0.13 | -1.2 |
2,982,592 | + | yqeF | b2844 | 0.13 | +0.5 |
2,982,599 | + | yqeF | b2844 | 0.14 | +0.2 |
2,982,607 | - | yqeF | b2844 | 0.15 | -0.4 |
2,982,615 | + | yqeF | b2844 | 0.15 | -1.3 |
2,982,649 | - | yqeF | b2844 | 0.18 | +0.2 |
2,982,697 | + | yqeF | b2844 | 0.22 | +0.3 |
2,982,697 | + | yqeF | b2844 | 0.22 | -0.5 |
2,982,725 | - | yqeF | b2844 | 0.25 | +0.1 |
2,982,790 | + | yqeF | b2844 | 0.30 | +0.6 |
2,982,791 | - | yqeF | b2844 | 0.30 | -0.3 |
2,982,791 | - | yqeF | b2844 | 0.30 | +1.2 |
2,982,884 | - | yqeF | b2844 | 0.38 | -2.0 |
2,982,928 | + | yqeF | b2844 | 0.42 | +0.4 |
2,983,088 | + | yqeF | b2844 | 0.55 | -1.0 |
Or see this region's nucleotide sequence