Strain Fitness in Escherichia coli BW25113 around b2617

Experiment: DRT_type_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecN and smpA are separated by 148 nucleotidessmpA and b2618 are separated by 61 nucleotidesb2618 and yfjG overlap by 11 nucleotidesyfjG and smpB are separated by 131 nucleotides b2616: recN - recombination and repair protein (NCBI), at 2,749,817 to 2,751,478 recN b2617: smpA - small membrane protein A (VIMSS), at 2,751,627 to 2,751,968 smpA b2618: b2618 - orf, hypothetical protein (VIMSS), at 2,752,030 to 2,752,320 b2618 b2619: yfjG - hypothetical protein (NCBI), at 2,752,310 to 2,752,786 yfjG b2620: smpB - SsrA-binding protein (NCBI), at 2,752,918 to 2,753,400 smpB Position (kb) 2751 2752Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2750.651 kb on - strand, within recNat 2750.658 kb on + strand, within recNat 2750.663 kb on + strand, within recNat 2750.663 kb on + strand, within recNat 2750.682 kb on - strand, within recNat 2750.715 kb on + strand, within recNat 2750.759 kb on - strand, within recNat 2750.769 kb on + strand, within recNat 2750.769 kb on + strand, within recNat 2750.801 kb on + strand, within recNat 2750.888 kb on - strand, within recNat 2750.912 kb on - strand, within recNat 2750.940 kb on + strand, within recNat 2750.940 kb on + strandat 2750.969 kb on - strand, within recNat 2750.971 kb on - strand, within recNat 2751.025 kb on + strand, within recNat 2751.106 kb on - strand, within recNat 2751.114 kb on + strand, within recNat 2751.127 kb on + strand, within recNat 2751.139 kb on + strand, within recNat 2751.139 kb on + strand, within recNat 2751.274 kb on - strand, within recNat 2751.274 kb on - strand, within recNat 2751.357 kb on - strandat 2751.357 kb on - strandat 2751.363 kb on + strandat 2751.363 kb on + strandat 2751.436 kb on + strandat 2751.588 kb on + strandat 2751.588 kb on + strandat 2751.813 kb on - strand, within smpAat 2751.840 kb on + strand, within smpAat 2751.878 kb on + strand, within smpAat 2751.888 kb on - strand, within smpAat 2751.888 kb on - strand, within smpAat 2751.941 kb on + strandat 2752.081 kb on + strand, within b2618at 2752.081 kb on + strand, within b2618at 2752.092 kb on + strand, within b2618at 2752.118 kb on - strand, within b2618at 2752.150 kb on + strand, within b2618at 2752.822 kb on + strandat 2752.851 kb on - strandat 2752.936 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction DRT_type_3
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2,750,651 - recN b2616 0.50 -1.2
2,750,658 + recN b2616 0.51 -2.8
2,750,663 + recN b2616 0.51 -1.2
2,750,663 + recN b2616 0.51 -3.4
2,750,682 - recN b2616 0.52 -1.6
2,750,715 + recN b2616 0.54 -2.5
2,750,759 - recN b2616 0.57 -1.5
2,750,769 + recN b2616 0.57 -0.8
2,750,769 + recN b2616 0.57 -0.6
2,750,801 + recN b2616 0.59 -2.5
2,750,888 - recN b2616 0.64 -0.6
2,750,912 - recN b2616 0.66 -1.6
2,750,940 + recN b2616 0.68 -1.2
2,750,940 + -0.2
2,750,969 - recN b2616 0.69 -0.2
2,750,971 - recN b2616 0.69 -1.8
2,751,025 + recN b2616 0.73 -1.5
2,751,106 - recN b2616 0.78 -2.4
2,751,114 + recN b2616 0.78 -0.2
2,751,127 + recN b2616 0.79 -4.3
2,751,139 + recN b2616 0.80 -1.1
2,751,139 + recN b2616 0.80 -2.2
2,751,274 - recN b2616 0.88 -1.1
2,751,274 - recN b2616 0.88 -1.7
2,751,357 - -2.6
2,751,357 - -3.1
2,751,363 + -1.8
2,751,363 + -2.0
2,751,436 + -4.4
2,751,588 + -0.4
2,751,588 + +0.4
2,751,813 - smpA b2617 0.54 -1.1
2,751,840 + smpA b2617 0.62 +0.1
2,751,878 + smpA b2617 0.73 -4.9
2,751,888 - smpA b2617 0.76 -0.7
2,751,888 - smpA b2617 0.76 -0.4
2,751,941 + -1.1
2,752,081 + b2618 b2618 0.18 -1.1
2,752,081 + b2618 b2618 0.18 -1.6
2,752,092 + b2618 b2618 0.21 +0.6
2,752,118 - b2618 b2618 0.30 +0.4
2,752,150 + b2618 b2618 0.41 -0.8
2,752,822 + +0.4
2,752,851 - -1.6
2,752,936 + +1.4

Or see this region's nucleotide sequence