Experiment: DRT_type_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeiH and nfo are separated by 73 nucleotides nfo and yeiI are separated by 2 nucleotides
b2158: yeiH - conserved inner membrane protein (NCBI), at 2,247,739 to 2,248,788
yeiH
b2159: nfo - endonuclease IV (NCBI), at 2,248,862 to 2,249,719
nfo
b2160: yeiI - predicted kinase (NCBI), at 2,249,722 to 2,250,810
yeiI
Position (kb)
2248
2249
2250 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2247.869 kb on + strand, within yeiH at 2247.879 kb on + strand, within yeiH at 2247.879 kb on + strand, within yeiH at 2247.887 kb on - strand, within yeiH at 2247.904 kb on + strand, within yeiH at 2247.912 kb on - strand, within yeiH at 2247.912 kb on - strand, within yeiH at 2247.960 kb on - strand, within yeiH at 2248.074 kb on + strand, within yeiH at 2248.074 kb on + strand, within yeiH at 2248.114 kb on + strand, within yeiH at 2248.155 kb on + strand, within yeiH at 2248.161 kb on + strand, within yeiH at 2248.161 kb on + strand, within yeiH at 2248.167 kb on + strand, within yeiH at 2248.167 kb on + strand, within yeiH at 2248.185 kb on + strand, within yeiH at 2248.215 kb on + strand, within yeiH at 2248.282 kb on - strand, within yeiH at 2248.282 kb on - strand, within yeiH at 2248.445 kb on + strand, within yeiH at 2248.536 kb on - strand, within yeiH at 2248.536 kb on - strand, within yeiH at 2248.574 kb on + strand, within yeiH at 2248.607 kb on + strand, within yeiH at 2248.660 kb on - strand, within yeiH at 2248.660 kb on - strand, within yeiH at 2248.664 kb on - strand, within yeiH at 2248.705 kb on + strand at 2248.723 kb on - strand at 2248.805 kb on - strand at 2248.805 kb on - strand at 2248.869 kb on + strand at 2248.877 kb on + strand at 2248.882 kb on + strand at 2248.890 kb on - strand at 2248.998 kb on - strand, within nfo at 2249.049 kb on - strand, within nfo at 2249.301 kb on + strand, within nfo at 2249.311 kb on + strand, within nfo at 2249.311 kb on + strand, within nfo at 2249.408 kb on + strand, within nfo at 2249.543 kb on + strand, within nfo at 2249.543 kb on + strand, within nfo at 2249.580 kb on + strand, within nfo at 2249.588 kb on + strand, within nfo at 2249.601 kb on - strand, within nfo at 2249.859 kb on + strand, within yeiI at 2249.900 kb on - strand, within yeiI at 2249.900 kb on - strand, within yeiI at 2250.009 kb on + strand, within yeiI at 2250.009 kb on + strand, within yeiI at 2250.121 kb on - strand, within yeiI at 2250.126 kb on - strand, within yeiI at 2250.314 kb on - strand, within yeiI at 2250.314 kb on - strand, within yeiI at 2250.332 kb on - strand, within yeiI at 2250.333 kb on + strand, within yeiI at 2250.341 kb on - strand, within yeiI at 2250.500 kb on - strand, within yeiI at 2250.620 kb on + strand, within yeiI at 2250.620 kb on + strand, within yeiI at 2250.640 kb on - strand, within yeiI at 2250.640 kb on - strand, within yeiI at 2250.667 kb on + strand, within yeiI
Per-strain Table
Position Strand Gene LocusTag Fraction DRT_type_3 remove 2,247,869 + yeiH b2158 0.12 -0.5 2,247,879 + yeiH b2158 0.13 -0.7 2,247,879 + yeiH b2158 0.13 +0.8 2,247,887 - yeiH b2158 0.14 +0.3 2,247,904 + yeiH b2158 0.16 -0.4 2,247,912 - yeiH b2158 0.16 +0.1 2,247,912 - yeiH b2158 0.16 +0.4 2,247,960 - yeiH b2158 0.21 -5.0 2,248,074 + yeiH b2158 0.32 -0.5 2,248,074 + yeiH b2158 0.32 -0.2 2,248,114 + yeiH b2158 0.36 -0.9 2,248,155 + yeiH b2158 0.40 +1.0 2,248,161 + yeiH b2158 0.40 +0.6 2,248,161 + yeiH b2158 0.40 +0.1 2,248,167 + yeiH b2158 0.41 -0.9 2,248,167 + yeiH b2158 0.41 -0.4 2,248,185 + yeiH b2158 0.42 -1.6 2,248,215 + yeiH b2158 0.45 -0.7 2,248,282 - yeiH b2158 0.52 -0.0 2,248,282 - yeiH b2158 0.52 -0.7 2,248,445 + yeiH b2158 0.67 -1.0 2,248,536 - yeiH b2158 0.76 +0.7 2,248,536 - yeiH b2158 0.76 -0.1 2,248,574 + yeiH b2158 0.80 +0.9 2,248,607 + yeiH b2158 0.83 +0.4 2,248,660 - yeiH b2158 0.88 -0.2 2,248,660 - yeiH b2158 0.88 -1.4 2,248,664 - yeiH b2158 0.88 +1.8 2,248,705 + -0.5 2,248,723 - +0.2 2,248,805 - +0.4 2,248,805 - +2.0 2,248,869 + -0.1 2,248,877 + +0.4 2,248,882 + -4.1 2,248,890 - -0.5 2,248,998 - nfo b2159 0.16 +0.4 2,249,049 - nfo b2159 0.22 +0.9 2,249,301 + nfo b2159 0.51 +1.0 2,249,311 + nfo b2159 0.52 +0.9 2,249,311 + nfo b2159 0.52 +0.3 2,249,408 + nfo b2159 0.64 -0.0 2,249,543 + nfo b2159 0.79 +1.3 2,249,543 + nfo b2159 0.79 -0.1 2,249,580 + nfo b2159 0.84 +0.8 2,249,588 + nfo b2159 0.85 +1.4 2,249,601 - nfo b2159 0.86 +0.5 2,249,859 + yeiI b2160 0.13 +1.0 2,249,900 - yeiI b2160 0.16 +0.4 2,249,900 - yeiI b2160 0.16 -0.2 2,250,009 + yeiI b2160 0.26 -1.6 2,250,009 + yeiI b2160 0.26 -0.8 2,250,121 - yeiI b2160 0.37 -0.1 2,250,126 - yeiI b2160 0.37 +0.6 2,250,314 - yeiI b2160 0.54 +0.7 2,250,314 - yeiI b2160 0.54 -3.7 2,250,332 - yeiI b2160 0.56 +0.3 2,250,333 + yeiI b2160 0.56 -0.9 2,250,341 - yeiI b2160 0.57 +0.6 2,250,500 - yeiI b2160 0.71 -0.2 2,250,620 + yeiI b2160 0.82 +0.9 2,250,620 + yeiI b2160 0.82 +0.3 2,250,640 - yeiI b2160 0.84 -2.5 2,250,640 - yeiI b2160 0.84 +1.5 2,250,667 + yeiI b2160 0.87 +0.3
Or see this region's nucleotide sequence