Experiment: DRT_type_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ykgC and ykgD are separated by 225 nucleotides ykgD and ykgE are separated by 526 nucleotides
b0304: ykgC - putative oxidoreductase (VIMSS), at 317,900 to 319,225
ykgC
b0305: ykgD - predicted DNA-binding transcriptional regulator (NCBI), at 319,451 to 320,305
ykgD
b0306: ykgE - predicted oxidoreductase (NCBI), at 320,832 to 321,551
ykgE
Position (kb) 319
320
321 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 318.480 kb on + strand, within ykgC at 318.488 kb on - strand, within ykgC at 318.490 kb on + strand, within ykgC at 318.498 kb on + strand, within ykgC at 318.499 kb on + strand, within ykgC at 318.509 kb on + strand, within ykgC at 318.509 kb on + strand, within ykgC at 318.517 kb on + strand, within ykgC at 318.524 kb on - strand, within ykgC at 318.537 kb on + strand, within ykgC at 318.537 kb on + strand, within ykgC at 318.547 kb on + strand, within ykgC at 318.547 kb on + strand, within ykgC at 318.647 kb on + strand, within ykgC at 318.670 kb on + strand, within ykgC at 318.670 kb on + strand, within ykgC at 318.681 kb on + strand, within ykgC at 318.697 kb on + strand, within ykgC at 318.697 kb on + strand, within ykgC at 318.697 kb on + strand, within ykgC at 318.698 kb on + strand, within ykgC at 318.698 kb on + strand, within ykgC at 318.705 kb on - strand, within ykgC at 318.785 kb on + strand, within ykgC at 318.793 kb on - strand, within ykgC at 318.793 kb on - strand, within ykgC at 318.834 kb on + strand, within ykgC at 318.834 kb on + strand, within ykgC at 318.893 kb on - strand, within ykgC at 318.911 kb on - strand, within ykgC at 318.915 kb on - strand, within ykgC at 318.915 kb on - strand, within ykgC at 318.936 kb on - strand, within ykgC at 318.951 kb on + strand, within ykgC at 318.954 kb on - strand, within ykgC at 318.954 kb on - strand, within ykgC at 319.019 kb on - strand, within ykgC at 319.019 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.029 kb on - strand, within ykgC at 319.046 kb on - strand, within ykgC at 319.046 kb on - strand, within ykgC at 319.049 kb on - strand, within ykgC at 319.049 kb on - strand, within ykgC at 319.059 kb on - strand, within ykgC at 319.074 kb on - strand, within ykgC at 319.134 kb on - strand at 319.134 kb on - strand at 319.138 kb on - strand at 319.138 kb on - strand at 319.138 kb on - strand at 319.139 kb on - strand at 319.139 kb on - strand at 319.146 kb on - strand at 319.146 kb on - strand at 319.164 kb on - strand at 319.187 kb on - strand at 319.187 kb on - strand at 319.204 kb on - strand at 319.355 kb on - strand at 319.387 kb on - strand at 319.454 kb on - strand at 319.459 kb on + strand at 319.466 kb on - strand at 319.466 kb on - strand at 319.487 kb on - strand at 319.487 kb on - strand at 319.495 kb on - strand at 319.495 kb on - strand at 319.534 kb on - strand at 319.578 kb on + strand, within ykgD at 319.578 kb on + strand, within ykgD at 319.586 kb on - strand, within ykgD at 319.586 kb on - strand, within ykgD at 319.686 kb on - strand, within ykgD at 319.702 kb on + strand, within ykgD at 319.702 kb on + strand, within ykgD at 319.709 kb on + strand, within ykgD at 319.714 kb on + strand, within ykgD at 319.714 kb on + strand, within ykgD at 319.715 kb on - strand, within ykgD at 319.722 kb on + strand, within ykgD at 319.724 kb on + strand, within ykgD at 319.813 kb on - strand, within ykgD at 319.877 kb on + strand, within ykgD at 319.886 kb on + strand, within ykgD at 319.886 kb on + strand, within ykgD at 319.890 kb on - strand, within ykgD at 319.890 kb on - strand, within ykgD at 319.899 kb on - strand, within ykgD at 319.899 kb on - strand, within ykgD at 319.901 kb on + strand, within ykgD at 319.906 kb on - strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.939 kb on + strand, within ykgD at 319.947 kb on - strand, within ykgD at 319.947 kb on - strand, within ykgD at 319.949 kb on + strand, within ykgD at 319.992 kb on + strand, within ykgD at 319.992 kb on + strand, within ykgD at 320.034 kb on - strand, within ykgD at 320.034 kb on - strand, within ykgD at 320.034 kb on - strand, within ykgD at 320.047 kb on + strand, within ykgD at 320.055 kb on - strand, within ykgD at 320.057 kb on + strand, within ykgD at 320.065 kb on - strand, within ykgD at 320.065 kb on - strand, within ykgD at 320.065 kb on - strand, within ykgD at 320.181 kb on + strand, within ykgD at 320.181 kb on + strand, within ykgD at 320.183 kb on + strand, within ykgD at 320.183 kb on + strand, within ykgD at 320.183 kb on + strand, within ykgD at 320.191 kb on - strand, within ykgD at 320.191 kb on - strand, within ykgD at 320.194 kb on - strand, within ykgD at 320.207 kb on + strand, within ykgD at 320.215 kb on - strand, within ykgD at 320.254 kb on + strand at 320.278 kb on + strand at 320.278 kb on + strand at 320.283 kb on + strand at 320.283 kb on + strand at 320.283 kb on + strand at 320.283 kb on + strand at 320.292 kb on + strand at 320.293 kb on + strand at 320.293 kb on + strand at 320.299 kb on + strand at 320.343 kb on + strand at 320.387 kb on + strand at 320.576 kb on - strand at 320.654 kb on - strand at 320.723 kb on + strand at 320.728 kb on + strand at 320.729 kb on + strand at 320.729 kb on - strand at 320.731 kb on - strand at 320.781 kb on - strand at 320.788 kb on - strand at 320.788 kb on - strand at 320.807 kb on + strand at 320.813 kb on + strand at 320.815 kb on - strand at 320.821 kb on - strand at 320.865 kb on - strand at 320.883 kb on - strand at 320.884 kb on - strand at 320.886 kb on + strand at 320.886 kb on + strand at 320.894 kb on + strand at 320.894 kb on + strand at 320.898 kb on + strand at 320.898 kb on + strand at 320.899 kb on - strand at 320.901 kb on - strand at 320.904 kb on - strand, within ykgE at 320.944 kb on + strand, within ykgE at 320.944 kb on + strand, within ykgE at 320.959 kb on + strand, within ykgE at 320.959 kb on + strand, within ykgE at 320.971 kb on - strand, within ykgE at 320.975 kb on - strand, within ykgE at 320.975 kb on - strand, within ykgE at 320.977 kb on - strand, within ykgE at 320.978 kb on - strand, within ykgE at 320.983 kb on + strand, within ykgE at 321.022 kb on + strand, within ykgE at 321.027 kb on + strand, within ykgE at 321.027 kb on + strand, within ykgE at 321.035 kb on - strand, within ykgE at 321.065 kb on + strand, within ykgE at 321.073 kb on - strand, within ykgE at 321.106 kb on - strand, within ykgE at 321.202 kb on - strand, within ykgE at 321.221 kb on - strand, within ykgE at 321.221 kb on - strand, within ykgE at 321.236 kb on - strand, within ykgE at 321.236 kb on - strand, within ykgE at 321.249 kb on - strand, within ykgE at 321.266 kb on + strand, within ykgE
Per-strain Table
Position Strand Gene LocusTag Fraction DRT_type_3 remove 318,480 + ykgC b0304 0.44 -0.6 318,488 - ykgC b0304 0.44 -0.5 318,490 + ykgC b0304 0.44 -0.1 318,498 + ykgC b0304 0.45 +0.7 318,499 + ykgC b0304 0.45 -1.8 318,509 + ykgC b0304 0.46 +0.1 318,509 + ykgC b0304 0.46 +0.4 318,517 + ykgC b0304 0.47 -1.3 318,524 - ykgC b0304 0.47 -0.0 318,537 + ykgC b0304 0.48 -1.5 318,537 + ykgC b0304 0.48 +0.2 318,547 + ykgC b0304 0.49 +1.0 318,547 + ykgC b0304 0.49 +0.3 318,647 + ykgC b0304 0.56 -1.9 318,670 + ykgC b0304 0.58 +0.9 318,670 + ykgC b0304 0.58 -0.5 318,681 + ykgC b0304 0.59 -0.5 318,697 + ykgC b0304 0.60 -0.0 318,697 + ykgC b0304 0.60 +2.3 318,697 + ykgC b0304 0.60 -1.4 318,698 + ykgC b0304 0.60 -0.1 318,698 + ykgC b0304 0.60 +0.2 318,705 - ykgC b0304 0.61 +1.4 318,785 + ykgC b0304 0.67 +1.4 318,793 - ykgC b0304 0.67 +0.1 318,793 - ykgC b0304 0.67 -0.1 318,834 + ykgC b0304 0.70 +1.4 318,834 + ykgC b0304 0.70 +1.4 318,893 - ykgC b0304 0.75 +1.3 318,911 - ykgC b0304 0.76 +1.4 318,915 - ykgC b0304 0.77 +0.8 318,915 - ykgC b0304 0.77 -1.1 318,936 - ykgC b0304 0.78 +1.1 318,951 + ykgC b0304 0.79 +1.4 318,954 - ykgC b0304 0.79 +1.4 318,954 - ykgC b0304 0.79 -1.1 319,019 - ykgC b0304 0.84 -0.5 319,019 - ykgC b0304 0.84 +0.6 319,029 - ykgC b0304 0.85 -1.3 319,029 - ykgC b0304 0.85 -0.8 319,029 - ykgC b0304 0.85 -0.2 319,029 - ykgC b0304 0.85 -1.9 319,029 - ykgC b0304 0.85 -2.0 319,029 - ykgC b0304 0.85 -0.5 319,029 - ykgC b0304 0.85 +0.7 319,029 - ykgC b0304 0.85 -0.6 319,029 - ykgC b0304 0.85 -0.1 319,029 - ykgC b0304 0.85 +0.4 319,029 - ykgC b0304 0.85 +0.8 319,046 - ykgC b0304 0.86 -3.0 319,046 - ykgC b0304 0.86 -2.7 319,049 - ykgC b0304 0.87 +0.3 319,049 - ykgC b0304 0.87 -0.1 319,059 - ykgC b0304 0.87 -0.4 319,074 - ykgC b0304 0.89 +0.3 319,134 - -3.1 319,134 - -0.5 319,138 - +2.0 319,138 - +0.5 319,138 - -1.0 319,139 - -0.5 319,139 - -0.5 319,146 - -0.1 319,146 - -1.6 319,164 - -0.7 319,187 - +1.9 319,187 - -0.9 319,204 - +1.4 319,355 - -0.6 319,387 - -0.1 319,454 - +0.3 319,459 + -0.9 319,466 - +0.4 319,466 - -0.9 319,487 - -0.1 319,487 - +0.4 319,495 - -3.4 319,495 - -0.1 319,534 - +0.7 319,578 + ykgD b0305 0.15 -1.7 319,578 + ykgD b0305 0.15 -2.1 319,586 - ykgD b0305 0.16 -1.6 319,586 - ykgD b0305 0.16 +0.4 319,686 - ykgD b0305 0.27 -0.6 319,702 + ykgD b0305 0.29 +0.2 319,702 + ykgD b0305 0.29 +0.5 319,709 + ykgD b0305 0.30 +0.3 319,714 + ykgD b0305 0.31 -0.5 319,714 + ykgD b0305 0.31 -1.1 319,715 - ykgD b0305 0.31 -3.1 319,722 + ykgD b0305 0.32 -1.3 319,724 + ykgD b0305 0.32 +0.5 319,813 - ykgD b0305 0.42 +1.4 319,877 + ykgD b0305 0.50 -0.4 319,886 + ykgD b0305 0.51 +0.7 319,886 + ykgD b0305 0.51 +0.5 319,890 - ykgD b0305 0.51 +0.2 319,890 - ykgD b0305 0.51 +1.4 319,899 - ykgD b0305 0.52 -0.1 319,899 - ykgD b0305 0.52 -0.5 319,901 + ykgD b0305 0.53 -1.5 319,906 - ykgD b0305 0.53 -1.8 319,939 + ykgD b0305 0.57 -0.3 319,939 + ykgD b0305 0.57 -0.5 319,939 + ykgD b0305 0.57 -0.1 319,939 + ykgD b0305 0.57 +0.2 319,947 - ykgD b0305 0.58 +1.4 319,947 - ykgD b0305 0.58 -2.1 319,949 + ykgD b0305 0.58 -1.6 319,992 + ykgD b0305 0.63 +0.6 319,992 + ykgD b0305 0.63 +0.2 320,034 - ykgD b0305 0.68 -1.3 320,034 - ykgD b0305 0.68 -0.3 320,034 - ykgD b0305 0.68 +0.2 320,047 + ykgD b0305 0.70 -0.5 320,055 - ykgD b0305 0.71 -0.9 320,057 + ykgD b0305 0.71 +1.1 320,065 - ykgD b0305 0.72 -1.2 320,065 - ykgD b0305 0.72 -4.0 320,065 - ykgD b0305 0.72 +0.1 320,181 + ykgD b0305 0.85 -1.4 320,181 + ykgD b0305 0.85 +0.2 320,183 + ykgD b0305 0.86 -3.4 320,183 + ykgD b0305 0.86 +0.0 320,183 + ykgD b0305 0.86 -0.6 320,191 - ykgD b0305 0.87 -1.3 320,191 - ykgD b0305 0.87 -2.4 320,194 - ykgD b0305 0.87 +1.1 320,207 + ykgD b0305 0.88 -3.6 320,215 - ykgD b0305 0.89 +1.4 320,254 + -0.2 320,278 + -2.6 320,278 + -0.2 320,283 + +1.6 320,283 + -0.1 320,283 + -0.4 320,283 + -0.4 320,292 + +0.7 320,293 + -3.5 320,293 + +0.7 320,299 + +0.0 320,343 + +0.4 320,387 + -1.4 320,576 - +1.4 320,654 - -0.1 320,723 + +0.3 320,728 + -0.2 320,729 + +0.8 320,729 - +0.4 320,731 - +1.4 320,781 - +0.1 320,788 - +0.8 320,788 - -0.6 320,807 + +0.4 320,813 + -0.7 320,815 - -0.9 320,821 - -1.8 320,865 - +1.0 320,883 - +0.7 320,884 - -1.5 320,886 + +1.6 320,886 + -1.8 320,894 + +0.9 320,894 + +0.1 320,898 + +1.1 320,898 + -0.3 320,899 - -1.9 320,901 - -0.6 320,904 - ykgE b0306 0.10 -1.8 320,944 + ykgE b0306 0.16 -1.5 320,944 + ykgE b0306 0.16 +0.2 320,959 + ykgE b0306 0.18 +1.1 320,959 + ykgE b0306 0.18 +1.9 320,971 - ykgE b0306 0.19 +0.5 320,975 - ykgE b0306 0.20 -3.1 320,975 - ykgE b0306 0.20 +0.2 320,977 - ykgE b0306 0.20 -0.7 320,978 - ykgE b0306 0.20 -1.0 320,983 + ykgE b0306 0.21 -0.9 321,022 + ykgE b0306 0.26 -0.0 321,027 + ykgE b0306 0.27 +0.5 321,027 + ykgE b0306 0.27 +1.5 321,035 - ykgE b0306 0.28 -0.1 321,065 + ykgE b0306 0.32 +0.7 321,073 - ykgE b0306 0.33 +0.8 321,106 - ykgE b0306 0.38 +0.9 321,202 - ykgE b0306 0.51 -0.8 321,221 - ykgE b0306 0.54 -0.6 321,221 - ykgE b0306 0.54 -0.3 321,236 - ykgE b0306 0.56 +1.0 321,236 - ykgE b0306 0.56 -0.2 321,249 - ykgE b0306 0.58 +0.5 321,266 + ykgE b0306 0.60 -0.1
Or see this region's nucleotide sequence