Experiment: retron_Ec_48_control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cobT and cobS are separated by 11 nucleotides cobS and cobU overlap by 4 nucleotides cobU and yeeH are separated by 303 nucleotides yeeH and insH-6 are separated by 150 nucleotides
b1991: cobT - nicotinate-nucleotide--dimethylbenzimidazolephosphoribosyltransferase (NCBI), at 2,061,412 to 2,062,491
cobT
b1992: cobS - cobalamin synthase (NCBI), at 2,062,503 to 2,063,246
cobS
b1993: cobU - adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase (NCBI), at 2,063,243 to 2,063,788
cobU
b4639: yeeH - no description, at 2,064,092 to 2,064,178
yeeH
b1994: insH-6 - CP4-44 prophage; IS5 transposase and trans-activator (NCBI), at 2,064,329 to 2,065,345
insH-6
Position (kb)
2063
2064 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2062.333 kb on + strand, within cobT at 2062.333 kb on + strand, within cobT at 2062.357 kb on - strand, within cobT at 2062.416 kb on - strand at 2062.704 kb on + strand, within cobS at 2063.068 kb on + strand, within cobS at 2063.182 kb on + strand at 2063.182 kb on - strand at 2063.203 kb on - strand at 2063.378 kb on - strand, within cobU at 2063.378 kb on - strand, within cobU at 2063.390 kb on + strand, within cobU at 2063.527 kb on + strand, within cobU at 2063.705 kb on - strand, within cobU at 2063.710 kb on + strand, within cobU at 2063.728 kb on - strand, within cobU at 2063.728 kb on - strand, within cobU at 2063.728 kb on - strand, within cobU at 2063.728 kb on - strand, within cobU at 2063.764 kb on - strand at 2063.882 kb on - strand at 2063.882 kb on - strand at 2064.082 kb on - strand at 2064.082 kb on - strand at 2064.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction retron_Ec_48_control remove 2,062,333 + cobT b1991 0.85 -0.0 2,062,333 + cobT b1991 0.85 -0.2 2,062,357 - cobT b1991 0.88 +2.3 2,062,416 - +1.5 2,062,704 + cobS b1992 0.27 +0.7 2,063,068 + cobS b1992 0.76 -0.1 2,063,182 + +0.0 2,063,182 - -1.5 2,063,203 - +0.3 2,063,378 - cobU b1993 0.25 +0.7 2,063,378 - cobU b1993 0.25 -0.3 2,063,390 + cobU b1993 0.27 -3.1 2,063,527 + cobU b1993 0.52 -1.4 2,063,705 - cobU b1993 0.85 -0.2 2,063,710 + cobU b1993 0.86 +0.3 2,063,728 - cobU b1993 0.89 +0.6 2,063,728 - cobU b1993 0.89 +0.6 2,063,728 - cobU b1993 0.89 +1.0 2,063,728 - cobU b1993 0.89 -0.0 2,063,764 - +0.6 2,063,882 - +0.6 2,063,882 - -0.4 2,064,082 - -1.7 2,064,082 - +0.1 2,064,179 - -0.6
Or see this region's nucleotide sequence