Strain Fitness in Escherichia coli BW25113 around b3785

Experiment: retron_Ec_48_control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	retron_Ec_48_control
3,966,070	+	rfe	b3784	0.12	-2.9
3,966,080	+	rfe	b3784	0.13	-2.9
3,966,105	+	rfe	b3784	0.15	-2.1
3,966,139	+	rfe	b3784	0.18	-1.0
3,966,141	+	rfe	b3784	0.18	-4.3
3,966,144	+	rfe	b3784	0.19	-2.5
3,966,144	+	rfe	b3784	0.19	-2.5
3,966,149	-	rfe	b3784	0.19	-4.0
3,966,160	+	rfe	b3784	0.20	-3.7
3,966,168	-	rfe	b3784	0.21	-5.0
3,966,223	-	rfe	b3784	0.26	-3.2
3,966,223	-	rfe	b3784	0.26	-4.4
3,966,240	+	rfe	b3784	0.27	-3.6
3,966,240	+	rfe	b3784	0.27	-2.0
3,966,240	+	rfe	b3784	0.27	-2.3
3,966,242	+	rfe	b3784	0.27	-3.5
3,966,242	+	rfe	b3784	0.27	-5.5
3,966,242	+	rfe	b3784	0.27	-3.7
3,966,242	+	rfe	b3784	0.27	-5.0
3,966,242	+	rfe	b3784	0.27	-1.9
3,966,242	+	rfe	b3784	0.27	-3.8
3,966,242	+	rfe	b3784	0.27	-1.4
3,966,248	-	rfe	b3784	0.28	-3.6
3,966,248	-	rfe	b3784	0.28	-4.6
3,966,248	-	rfe	b3784	0.28	-3.2
3,966,257	+	rfe	b3784	0.29	-3.3
3,966,257	+	rfe	b3784	0.29	-2.6
3,966,266	+	rfe	b3784	0.30	-4.7
3,966,266	+	rfe	b3784	0.30	-2.4
3,966,274	+	rfe	b3784	0.30	-4.6
3,966,362	+	rfe	b3784	0.38	-1.0
3,966,370	-	rfe	b3784	0.39	-2.9
3,966,370	-	rfe	b3784	0.39	-3.1
3,966,402	-	rfe	b3784	0.42	-3.8
3,966,428	+	rfe	b3784	0.44	-0.7
3,966,441	-	rfe	b3784	0.45	-4.4
3,966,441	-	rfe	b3784	0.45	-4.8
3,966,441	-	rfe	b3784	0.45	-4.1
3,966,441	-	rfe	b3784	0.45	-4.7
3,966,452	-	rfe	b3784	0.46	+0.3
3,966,452	-				-2.5
3,966,484	+	rfe	b3784	0.49	-2.9
3,966,505	-	rfe	b3784	0.51	-4.2
3,966,529	+	rfe	b3784	0.53	-3.1
3,966,537	-	rfe	b3784	0.54	-2.5
3,966,540	+	rfe	b3784	0.54	-4.8
3,966,542	-	rfe	b3784	0.55	-3.1
3,966,554	-	rfe	b3784	0.56	-3.2
3,966,555	+	rfe	b3784	0.56	-4.9
3,966,555	+	rfe	b3784	0.56	-3.4
3,966,573	-	rfe	b3784	0.57	-5.4
3,966,599	+	rfe	b3784	0.60	-3.0
3,966,599	+	rfe	b3784	0.60	-4.0
3,966,599	+	rfe	b3784	0.60	-3.0
3,966,636	+	rfe	b3784	0.63	-6.2
3,966,646	+	rfe	b3784	0.64	-2.9
3,966,646	+	rfe	b3784	0.64	-5.1
3,966,682	+	rfe	b3784	0.67	-2.8
3,966,709	-	rfe	b3784	0.70	-5.0
3,966,709	-	rfe	b3784	0.70	-3.1
3,966,722	+	rfe	b3784	0.71	-2.9
3,966,736	+	rfe	b3784	0.72	-3.0
3,966,736	+	rfe	b3784	0.72	-1.8
3,966,744	-	rfe	b3784	0.73	-6.1
3,966,754	+	rfe	b3784	0.74	-3.4
3,966,757	-	rfe	b3784	0.74	-5.8
3,966,757	-	rfe	b3784	0.74	-4.5
3,966,762	-	rfe	b3784	0.75	-2.1
3,966,768	+	rfe	b3784	0.75	-4.1
3,966,807	+	rfe	b3784	0.79	-3.1
3,966,807	+	rfe	b3784	0.79	-3.1
3,966,829	+	rfe	b3784	0.81	-1.0
3,966,829	+	rfe	b3784	0.81	-4.4
3,966,840	+	rfe	b3784	0.82	-4.8
3,966,848	-	rfe	b3784	0.82	-4.0
3,966,848	-	rfe	b3784	0.82	-3.9
3,966,858	-	rfe	b3784	0.83	-2.9
3,966,858	-	rfe	b3784	0.83	-3.4
3,966,896	+	rfe	b3784	0.87	-3.3
3,966,908	-	rfe	b3784	0.88	-3.6
3,966,909	-	rfe	b3784	0.88	-2.0
3,966,909	-	rfe	b3784	0.88	-2.4
3,966,909	-	rfe	b3784	0.88	-2.8
3,966,918	-	rfe	b3784	0.89	-4.1
3,966,929	+	rfe	b3784	0.90	-3.6
3,966,935	-				-5.0
3,966,939	+				-3.7
3,966,949	+				-2.6
3,966,966	-				-2.0
3,966,993	+				-0.4
3,967,001	-				-3.0
3,967,051	+				-1.4
3,967,070	-				-1.3
3,967,109	+				-1.1
3,967,128	+				-0.4
3,967,136	-				-3.2
3,967,144	-				-1.9
3,967,161	-	wzzE	b3785	0.10	-0.1
3,967,162	+	wzzE	b3785	0.10	-2.5
3,967,162	+	wzzE	b3785	0.10	+0.0
3,967,162	+	wzzE	b3785	0.10	-1.0
3,967,162	+	wzzE	b3785	0.10	+1.2
3,967,162	+	wzzE	b3785	0.10	+0.1
3,967,162	+	wzzE	b3785	0.10	+0.7
3,967,162	+	wzzE	b3785	0.10	-0.3
3,967,170	-	wzzE	b3785	0.11	-1.2
3,967,170	-	wzzE	b3785	0.11	-1.2
3,967,183	+	wzzE	b3785	0.12	-0.1
3,967,226	-	wzzE	b3785	0.16	-1.3
3,967,230	+	wzzE	b3785	0.17	-0.9
3,967,235	-	wzzE	b3785	0.17	+0.6
3,967,255	+	wzzE	b3785	0.19	-0.0
3,967,266	+	wzzE	b3785	0.20	-0.5
3,967,274	-	wzzE	b3785	0.21	-1.0
3,967,276	-	wzzE	b3785	0.21	-0.8
3,967,276	-	wzzE	b3785	0.21	+0.3
3,967,295	+	wzzE	b3785	0.23	+1.0
3,967,295	+	wzzE	b3785	0.23	-1.2
3,967,295	+	wzzE	b3785	0.23	+0.3
3,967,303	-	wzzE	b3785	0.24	-0.9
3,967,317	+	wzzE	b3785	0.25	-0.3
3,967,319	-	wzzE	b3785	0.25	+0.3
3,967,339	+	wzzE	b3785	0.27	-2.3
3,967,339	+	wzzE	b3785	0.27	-1.1
3,967,346	-	wzzE	b3785	0.28	-0.2
3,967,346	-	wzzE	b3785	0.28	+0.9
3,967,347	-	wzzE	b3785	0.28	-2.0
3,967,347	-	wzzE	b3785	0.28	-3.1
3,967,352	+	wzzE	b3785	0.28	-3.3
3,967,380	-	wzzE	b3785	0.31	-1.8
3,967,386	-	wzzE	b3785	0.32	+0.2
3,967,389	-	wzzE	b3785	0.32	-1.5
3,967,421	+	wzzE	b3785	0.35	-0.6
3,967,421	+	wzzE	b3785	0.35	+0.5
3,967,421	+	wzzE	b3785	0.35	-0.6
3,967,421	+	wzzE	b3785	0.35	-0.1
3,967,421	+	wzzE	b3785	0.35	+1.0
3,967,462	+	wzzE	b3785	0.39	-0.3
3,967,462	+	wzzE	b3785	0.39	-0.5
3,967,507	+	wzzE	b3785	0.43	-2.8
3,967,522	+	wzzE	b3785	0.45	-1.5
3,967,522	+	wzzE	b3785	0.45	-0.3
3,967,522	+	wzzE	b3785	0.45	-1.4
3,967,524	+	wzzE	b3785	0.45	-3.9
3,967,524	+	wzzE	b3785	0.45	-0.4
3,967,530	-	wzzE	b3785	0.45	-0.5
3,967,563	+	wzzE	b3785	0.49	-2.2
3,967,564	-	wzzE	b3785	0.49	-1.5
3,967,564	-	wzzE	b3785	0.49	-1.7
3,967,571	-	wzzE	b3785	0.49	+0.5
3,967,586	-	wzzE	b3785	0.51	-1.4
3,967,618	+	wzzE	b3785	0.54	-0.5
3,967,685	+	wzzE	b3785	0.60	-0.2
3,967,685	+	wzzE	b3785	0.60	-1.3
3,967,685	+	wzzE	b3785	0.60	-1.1
3,967,686	+	wzzE	b3785	0.60	+0.5
3,967,686	+	wzzE	b3785	0.60	-2.7
3,967,738	-	wzzE	b3785	0.65	-0.8
3,967,738	-	wzzE	b3785	0.65	-2.1
3,967,778	+	wzzE	b3785	0.69	-2.1
3,967,778	+	wzzE	b3785	0.69	-0.6
3,967,778	+	wzzE	b3785	0.69	-2.4
3,967,778	+	wzzE	b3785	0.69	-2.2
3,967,786	+	wzzE	b3785	0.70	-0.5
3,967,786	+	wzzE	b3785	0.70	-0.4
3,967,786	-	wzzE	b3785	0.70	-2.2
3,967,786	-	wzzE	b3785	0.70	-1.9
3,967,786	-	wzzE	b3785	0.70	-2.8
3,967,786	-	wzzE	b3785	0.70	-1.3
3,967,793	-	wzzE	b3785	0.71	-1.2
3,967,811	+	wzzE	b3785	0.72	-3.8
3,967,819	-	wzzE	b3785	0.73	+1.4
3,967,819	-	wzzE	b3785	0.73	-0.6
3,967,837	+	wzzE	b3785	0.75	-4.5
3,967,843	+	wzzE	b3785	0.75	-1.7
3,967,843	+	wzzE	b3785	0.75	-1.8
3,967,896	-	wzzE	b3785	0.80	+0.8
3,967,896	-	wzzE	b3785	0.80	-0.4
3,967,901	-	wzzE	b3785	0.81	+1.3
3,967,901	-	wzzE	b3785	0.81	+1.0
3,967,913	-	wzzE	b3785	0.82	-2.0
3,967,915	+	wzzE	b3785	0.82	-3.7
3,967,917	+	wzzE	b3785	0.82	-1.8
3,967,923	-	wzzE	b3785	0.83	+0.5
3,967,925	-	wzzE	b3785	0.83	-2.3
3,967,925	-	wzzE	b3785	0.83	+0.2
3,967,937	+	wzzE	b3785	0.84	-0.1
3,967,950	-	wzzE	b3785	0.86	+0.1
3,967,964	-	wzzE	b3785	0.87	-0.6
3,967,979	-	wzzE	b3785	0.88	-0.1
3,967,979	-	wzzE	b3785	0.88	+0.1
3,967,982	+	wzzE	b3785	0.89	-2.7
3,968,017	-				-0.4
3,968,025	+				-3.8
3,968,025	+				-2.5
3,968,033	-				+0.9
3,968,033	-				-0.1
3,968,041	+				-4.6
3,968,058	+				-2.1
3,968,058	+				-2.6
3,968,058	+				-3.7
3,968,063	+				-2.1
3,968,063	+				-1.1
3,968,066	-				+0.2
3,968,069	+				-2.0
3,968,114	-				+0.2
3,968,114	-				+1.8
3,968,129	+				-2.5
3,968,157	+				-0.0
3,968,167	+				-3.6
3,968,179	-				-4.1
3,968,212	+				-2.5
3,968,213	+				-2.6
3,968,213	+				-4.4
3,968,221	-				-1.6
3,968,261	+				-3.6
3,968,261	+				-3.3
3,968,267	-				-1.4
3,968,267	-				-4.3
3,968,269	+	rffE	b3786	0.10	-4.5
3,968,272	-	rffE	b3786	0.10	-3.6
3,968,277	-	rffE	b3786	0.11	-4.3
3,968,277	-	rffE	b3786	0.11	-3.7
3,968,288	-	rffE	b3786	0.12	-3.0
3,968,293	+	rffE	b3786	0.12	-5.0
3,968,293	+	rffE	b3786	0.12	-4.3
3,968,310	-	rffE	b3786	0.14	-3.5
3,968,310	-	rffE	b3786	0.14	-1.6
3,968,331	+	rffE	b3786	0.15	-1.9
3,968,340	+	rffE	b3786	0.16	-3.1
3,968,360	+	rffE	b3786	0.18	-2.2
3,968,365	+	rffE	b3786	0.18	-2.0
3,968,394	-	rffE	b3786	0.21	-2.3
3,968,394	-	rffE	b3786	0.21	-3.3
3,968,415	-	rffE	b3786	0.23	-4.0
3,968,421	-	rffE	b3786	0.23	-3.8
3,968,428	+	rffE	b3786	0.24	-2.5
3,968,437	-	rffE	b3786	0.25	-4.2
3,968,437	-	rffE	b3786	0.25	-5.0
3,968,452	+	rffE	b3786	0.26	-3.6
3,968,458	-	rffE	b3786	0.27	-5.2
3,968,487	+	rffE	b3786	0.29	-3.7
3,968,487	+	rffE	b3786	0.29	-1.2
3,968,505	+	rffE	b3786	0.31	-3.9
3,968,505	+	rffE	b3786	0.31	-2.9
3,968,508	-	rffE	b3786	0.31	-4.5
3,968,508	-	rffE	b3786	0.31	-2.4
3,968,510	+	rffE	b3786	0.31	-5.6
3,968,510	+	rffE	b3786	0.31	-2.6
3,968,513	-	rffE	b3786	0.32	-4.1
3,968,515	+	rffE	b3786	0.32	-2.6
3,968,522	+	rffE	b3786	0.32	-1.4
3,968,522	+	rffE	b3786	0.32	-2.3
3,968,546	+	rffE	b3786	0.34	-2.4
3,968,546	+	rffE	b3786	0.34	-1.5
3,968,549	-	rffE	b3786	0.35	-2.3
3,968,549	-	rffE	b3786	0.35	-3.0
3,968,549	-	rffE	b3786	0.35	-3.4
3,968,550	+	rffE	b3786	0.35	-3.7
3,968,556	+	rffE	b3786	0.35	-2.7
3,968,556	+	rffE	b3786	0.35	-4.5
3,968,556	+	rffE	b3786	0.35	-3.0
3,968,562	-	rffE	b3786	0.36	-5.0
3,968,562	-	rffE	b3786	0.36	-2.9
3,968,564	-	rffE	b3786	0.36	-3.3
3,968,564	-	rffE	b3786	0.36	-2.6
3,968,584	+	rffE	b3786	0.38	-2.9
3,968,584	+	rffE	b3786	0.38	-3.5
3,968,597	-	rffE	b3786	0.39	-5.1
3,968,598	-	rffE	b3786	0.39	-4.6
3,968,628	+	rffE	b3786	0.42	-2.2
3,968,662	+	rffE	b3786	0.45	-4.3
3,968,662	+	rffE	b3786	0.45	-3.9
3,968,664	+	rffE	b3786	0.45	-1.7
3,968,682	-	rffE	b3786	0.47	-1.9
3,968,686	+	rffE	b3786	0.47	-3.3
3,968,686	+	rffE	b3786	0.47	-3.2
3,968,693	+	rffE	b3786	0.47	-4.4
3,968,693	-	rffE	b3786	0.47	-3.7
3,968,693	-	rffE	b3786	0.47	-2.3
3,968,700	+	rffE	b3786	0.48	-5.1
3,968,713	-	rffE	b3786	0.49	-5.2
3,968,727	+	rffE	b3786	0.50	-3.6
3,968,838	+	rffE	b3786	0.60	-2.6
3,968,856	-	rffE	b3786	0.62	-2.7
3,968,856	-	rffE	b3786	0.62	-2.9
3,968,867	-	rffE	b3786	0.63	-2.7
3,968,894	-	rffE	b3786	0.65	-3.0
3,968,907	+	rffE	b3786	0.66	-4.1
3,968,907	+	rffE	b3786	0.66	-3.0
3,968,915	-				-2.9
3,968,915	-	rffE	b3786	0.67	-4.6
3,968,915	-	rffE	b3786	0.67	-3.4
3,968,917	+	rffE	b3786	0.67	-0.5
3,968,926	-	rffE	b3786	0.68	-3.7
3,968,963	+	rffE	b3786	0.71	-2.4
3,968,963	+	rffE	b3786	0.71	-2.4
3,968,969	-	rffE	b3786	0.72	-3.7
3,968,971	-	rffE	b3786	0.72	-2.7
3,969,020	+	rffE	b3786	0.76	-3.6
3,969,030	+	rffE	b3786	0.77	-3.8
3,969,065	+	rffE	b3786	0.80	-1.7
3,969,065	+	rffE	b3786	0.80	-1.5
3,969,079	+	rffE	b3786	0.82	-0.5
3,969,089	-	rffE	b3786	0.82	-3.8