Strain Fitness in Escherichia coli BW25113 around b3178

Experiment: GFP_control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglmM and folP overlap by 8 nucleotidesfolP and ftsH are separated by 89 nucleotidesftsH and rlmE are separated by 99 nucleotidesrlmE and yhbY are separated by 125 nucleotides b3176: glmM - phosphoglucosamine mutase (NCBI), at 3,320,755 to 3,322,092 glmM b3177: folP - 7,8-dihydropteroate synthase (VIMSS), at 3,322,085 to 3,322,933 folP b3178: ftsH - protease, ATP-dependent zinc-metallo (NCBI), at 3,323,023 to 3,324,957 ftsH b3179: rlmE - 23S rRNA U2552 ribose 2'-O-methyltransferase, SAM-dependent (NCBI), at 3,325,057 to 3,325,686 rlmE b3180: yhbY - predicted RNA-binding protein (NCBI), at 3,325,812 to 3,326,105 yhbY Position (kb) 3323 3324 3325Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3322.094 kb on - strandat 3322.095 kb on - strandat 3322.096 kb on - strandat 3322.096 kb on - strandat 3322.115 kb on - strandat 3322.944 kb on - strandat 3322.944 kb on - strandat 3323.027 kb on - strandat 3323.048 kb on - strandat 3323.048 kb on - strandat 3323.059 kb on - strandat 3323.059 kb on - strandat 3323.059 kb on - strandat 3323.074 kb on - strandat 3323.092 kb on - strandat 3323.096 kb on - strandat 3323.105 kb on - strandat 3323.105 kb on - strandat 3323.168 kb on - strandat 3324.988 kb on - strandat 3324.988 kb on - strandat 3325.020 kb on - strandat 3325.021 kb on - strandat 3325.022 kb on - strandat 3325.025 kb on - strandat 3325.061 kb on + strandat 3325.061 kb on + strandat 3325.064 kb on - strandat 3325.064 kb on - strandat 3325.085 kb on - strandat 3325.085 kb on - strandat 3325.749 kb on - strandat 3325.849 kb on + strand, within yhbYat 3325.849 kb on + strandat 3325.883 kb on - strand, within yhbYat 3325.908 kb on - strand, within yhbYat 3325.913 kb on + strand, within yhbYat 3325.921 kb on - strand, within yhbYat 3325.928 kb on + strand, within yhbYat 3325.932 kb on + strand, within yhbYat 3325.939 kb on + strandat 3325.940 kb on - strand, within yhbYat 3325.940 kb on - strand, within yhbY

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GFP_control
remove
3,322,094 - +0.8
3,322,095 - +0.7
3,322,096 - -3.2
3,322,096 - -2.9
3,322,115 - +0.4
3,322,944 - +0.1
3,322,944 - +1.0
3,323,027 - -0.0
3,323,048 - -0.1
3,323,048 - -1.6
3,323,059 - -0.2
3,323,059 - -2.3
3,323,059 - -3.9
3,323,074 - -1.7
3,323,092 - +1.9
3,323,096 - -0.2
3,323,105 - +0.2
3,323,105 - -0.8
3,323,168 - -0.3
3,324,988 - -1.5
3,324,988 - -5.6
3,325,020 - +0.6
3,325,021 - -1.2
3,325,022 - +1.0
3,325,025 - -1.7
3,325,061 + +1.9
3,325,061 + -0.4
3,325,064 - +0.6
3,325,064 - -0.3
3,325,085 - -1.7
3,325,085 - -1.8
3,325,749 - +0.4
3,325,849 + yhbY b3180 0.13 -2.4
3,325,849 + -0.7
3,325,883 - yhbY b3180 0.24 +1.0
3,325,908 - yhbY b3180 0.33 -5.1
3,325,913 + yhbY b3180 0.34 -2.5
3,325,921 - yhbY b3180 0.37 -0.2
3,325,928 + yhbY b3180 0.39 -2.2
3,325,932 + yhbY b3180 0.41 -0.7
3,325,939 + -0.1
3,325,940 - yhbY b3180 0.44 +0.5
3,325,940 - yhbY b3180 0.44 +0.3

Or see this region's nucleotide sequence