Strain Fitness in Escherichia coli BW25113 around b2984

Experiment: GFP_control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyghQ and yghR are separated by 45 nucleotidesyghR and yghS are separated by 31 nucleotidesyghS and yghT are separated by 173 nucleotides b2983: yghQ - predicted inner membrane protein (NCBI), at 3,129,363 to 3,130,430 yghQ b2984: yghR - predicted protein with nucleoside triphosphate hydrolase domain (NCBI), at 3,130,476 to 3,131,234 yghR b2985: yghS - predicted protein with nucleoside triphosphate hydrolase domain (NCBI), at 3,131,266 to 3,131,979 yghS b2986: yghT - predicted protein with nucleoside triphosphate hydrolase domain (NCBI), at 3,132,153 to 3,132,845 yghT Position (kb) 3130 3131 3132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3129.511 kb on - strand, within yghQat 3129.511 kb on - strand, within yghQat 3129.570 kb on - strand, within yghQat 3129.570 kb on - strand, within yghQat 3129.650 kb on - strand, within yghQat 3129.660 kb on - strand, within yghQat 3129.721 kb on + strand, within yghQat 3129.721 kb on + strand, within yghQat 3129.729 kb on + strand, within yghQat 3129.737 kb on - strand, within yghQat 3129.810 kb on + strand, within yghQat 3129.818 kb on - strand, within yghQat 3129.892 kb on - strand, within yghQat 3129.935 kb on - strand, within yghQat 3130.017 kb on - strand, within yghQat 3130.173 kb on + strand, within yghQat 3130.191 kb on + strand, within yghQat 3130.191 kb on + strand, within yghQat 3130.268 kb on - strand, within yghQat 3130.268 kb on - strand, within yghQat 3130.434 kb on + strandat 3130.546 kb on + strandat 3130.546 kb on + strandat 3130.549 kb on + strandat 3130.556 kb on - strand, within yghRat 3130.556 kb on - strand, within yghRat 3130.641 kb on + strand, within yghRat 3130.737 kb on - strand, within yghRat 3130.737 kb on - strand, within yghRat 3130.773 kb on - strand, within yghRat 3130.877 kb on + strand, within yghRat 3130.877 kb on + strand, within yghRat 3130.910 kb on + strand, within yghRat 3130.910 kb on + strand, within yghRat 3130.951 kb on - strand, within yghRat 3130.951 kb on - strand, within yghRat 3131.020 kb on - strand, within yghRat 3131.020 kb on - strand, within yghRat 3131.028 kb on - strand, within yghRat 3131.071 kb on - strand, within yghRat 3131.182 kb on - strandat 3131.192 kb on - strandat 3131.192 kb on - strandat 3131.197 kb on + strandat 3131.310 kb on - strandat 3131.310 kb on - strandat 3131.343 kb on - strand, within yghSat 3131.489 kb on + strand, within yghSat 3131.492 kb on - strand, within yghSat 3131.494 kb on + strand, within yghSat 3131.543 kb on + strand, within yghSat 3131.557 kb on - strand, within yghSat 3131.677 kb on + strand, within yghSat 3131.677 kb on + strand, within yghSat 3131.697 kb on + strand, within yghSat 3131.731 kb on + strand, within yghSat 3131.765 kb on + strand, within yghSat 3131.783 kb on + strand, within yghSat 3131.787 kb on - strand, within yghSat 3131.787 kb on - strand, within yghSat 3131.791 kb on + strand, within yghSat 3131.791 kb on + strand, within yghSat 3131.834 kb on + strand, within yghSat 3131.834 kb on + strand, within yghSat 3131.839 kb on + strand, within yghSat 3131.842 kb on - strand, within yghSat 3131.844 kb on + strand, within yghSat 3131.880 kb on + strand, within yghSat 3131.880 kb on + strand, within yghSat 3131.880 kb on + strand, within yghSat 3131.880 kb on + strand, within yghSat 3131.897 kb on + strand, within yghSat 3131.902 kb on + strand, within yghSat 3131.909 kb on + strandat 3131.909 kb on + strandat 3131.909 kb on + strandat 3131.910 kb on + strandat 3131.911 kb on + strandat 3131.911 kb on + strandat 3131.915 kb on + strandat 3131.919 kb on + strandat 3131.935 kb on + strandat 3132.208 kb on + strandat 3132.212 kb on - strandat 3132.214 kb on - strandat 3132.216 kb on + strandat 3132.216 kb on + strandat 3132.216 kb on + strandat 3132.216 kb on + strandat 3132.216 kb on - strandat 3132.216 kb on - strandat 3132.224 kb on - strand, within yghTat 3132.225 kb on - strand, within yghTat 3132.225 kb on - strand, within yghTat 3132.225 kb on - strand, within yghTat 3132.225 kb on - strand, within yghTat 3132.225 kb on - strand, within yghTat 3132.225 kb on - strand, within yghT

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Per-strain Table

Position Strand Gene LocusTag Fraction GFP_control
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3,129,511 - yghQ b2983 0.14 -0.5
3,129,511 - yghQ b2983 0.14 +0.2
3,129,570 - yghQ b2983 0.19 +0.5
3,129,570 - yghQ b2983 0.19 -1.4
3,129,650 - yghQ b2983 0.27 -0.5
3,129,660 - yghQ b2983 0.28 +1.0
3,129,721 + yghQ b2983 0.34 +0.9
3,129,721 + yghQ b2983 0.34 -0.1
3,129,729 + yghQ b2983 0.34 +1.0
3,129,737 - yghQ b2983 0.35 +0.3
3,129,810 + yghQ b2983 0.42 +1.2
3,129,818 - yghQ b2983 0.43 -0.7
3,129,892 - yghQ b2983 0.50 +0.2
3,129,935 - yghQ b2983 0.54 +0.8
3,130,017 - yghQ b2983 0.61 +0.6
3,130,173 + yghQ b2983 0.76 -1.9
3,130,191 + yghQ b2983 0.78 -0.5
3,130,191 + yghQ b2983 0.78 +0.6
3,130,268 - yghQ b2983 0.85 +1.2
3,130,268 - yghQ b2983 0.85 +0.4
3,130,434 + -1.4
3,130,546 + +0.2
3,130,546 + +0.1
3,130,549 + +0.7
3,130,556 - yghR b2984 0.11 -0.8
3,130,556 - yghR b2984 0.11 -1.0
3,130,641 + yghR b2984 0.22 -1.2
3,130,737 - yghR b2984 0.34 +1.1
3,130,737 - yghR b2984 0.34 +0.6
3,130,773 - yghR b2984 0.39 -0.4
3,130,877 + yghR b2984 0.53 -0.5
3,130,877 + yghR b2984 0.53 -1.8
3,130,910 + yghR b2984 0.57 +0.6
3,130,910 + yghR b2984 0.57 -0.6
3,130,951 - yghR b2984 0.63 -0.1
3,130,951 - yghR b2984 0.63 +0.1
3,131,020 - yghR b2984 0.72 +0.1
3,131,020 - yghR b2984 0.72 -1.3
3,131,028 - yghR b2984 0.73 -1.6
3,131,071 - yghR b2984 0.78 -0.4
3,131,182 - -0.7
3,131,192 - +0.7
3,131,192 - +0.9
3,131,197 + +0.5
3,131,310 - +1.0
3,131,310 - -1.4
3,131,343 - yghS b2985 0.11 +0.5
3,131,489 + yghS b2985 0.31 -0.9
3,131,492 - yghS b2985 0.32 +0.3
3,131,494 + yghS b2985 0.32 +0.0
3,131,543 + yghS b2985 0.39 +0.6
3,131,557 - yghS b2985 0.41 +0.5
3,131,677 + yghS b2985 0.58 -0.5
3,131,677 + yghS b2985 0.58 -0.5
3,131,697 + yghS b2985 0.60 +0.6
3,131,731 + yghS b2985 0.65 -0.7
3,131,765 + yghS b2985 0.70 -3.4
3,131,783 + yghS b2985 0.72 -0.1
3,131,787 - yghS b2985 0.73 -1.7
3,131,787 - yghS b2985 0.73 -1.3
3,131,791 + yghS b2985 0.74 -2.1
3,131,791 + yghS b2985 0.74 +1.3
3,131,834 + yghS b2985 0.80 +1.6
3,131,834 + yghS b2985 0.80 +0.3
3,131,839 + yghS b2985 0.80 +0.3
3,131,842 - yghS b2985 0.81 -0.2
3,131,844 + yghS b2985 0.81 -1.0
3,131,880 + yghS b2985 0.86 +0.8
3,131,880 + yghS b2985 0.86 +0.7
3,131,880 + yghS b2985 0.86 -1.0
3,131,880 + yghS b2985 0.86 -2.9
3,131,897 + yghS b2985 0.88 -0.4
3,131,902 + yghS b2985 0.89 +0.1
3,131,909 + -1.6
3,131,909 + +0.6
3,131,909 + +0.0
3,131,910 + -0.2
3,131,911 + -0.1
3,131,911 + -0.5
3,131,915 + -0.4
3,131,919 + +0.7
3,131,935 + -3.9
3,132,208 + +1.7
3,132,212 - -1.7
3,132,214 - -1.2
3,132,216 + +1.7
3,132,216 + +1.7
3,132,216 + +1.7
3,132,216 + -0.6
3,132,216 - +0.1
3,132,216 - -1.7
3,132,224 - yghT b2986 0.10 -0.1
3,132,225 - yghT b2986 0.10 +1.7
3,132,225 - yghT b2986 0.10 -2.1
3,132,225 - yghT b2986 0.10 +1.6
3,132,225 - yghT b2986 0.10 -2.6
3,132,225 - yghT b2986 0.10 -0.2
3,132,225 - yghT b2986 0.10 -0.1

Or see this region's nucleotide sequence