Experiment: GFP_control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ygcQ and ygcR overlap by 4 nucleotides ygcR and ygcS overlap by 23 nucleotides
b2769: ygcQ - putative flavoprotein (VIMSS), at 2,892,941 to 2,893,801
ygcQ
b2770: ygcR - putative transport protein (VIMSS), at 2,893,798 to 2,894,577
ygcR
b2771: ygcS - putative transport protein (VIMSS), at 2,894,555 to 2,895,892
ygcS
Position (kb)
2893
2894
2895 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2892.854 kb on - strand at 2892.888 kb on - strand at 2892.888 kb on - strand at 2892.914 kb on - strand at 2892.914 kb on - strand at 2892.914 kb on - strand at 2892.939 kb on + strand at 2892.973 kb on - strand at 2892.993 kb on - strand at 2893.003 kb on - strand at 2893.184 kb on + strand, within ygcQ at 2893.195 kb on - strand, within ygcQ at 2893.279 kb on - strand, within ygcQ at 2893.284 kb on - strand, within ygcQ at 2893.368 kb on - strand, within ygcQ at 2893.552 kb on + strand, within ygcQ at 2893.566 kb on - strand, within ygcQ at 2893.636 kb on - strand, within ygcQ at 2893.657 kb on - strand, within ygcQ at 2893.717 kb on + strand at 2893.825 kb on + strand at 2893.825 kb on + strand at 2893.883 kb on - strand, within ygcR at 2893.891 kb on - strand, within ygcR at 2893.896 kb on - strand, within ygcR at 2893.959 kb on + strand, within ygcR at 2894.040 kb on + strand, within ygcR at 2894.040 kb on + strand, within ygcR at 2894.141 kb on - strand, within ygcR at 2894.260 kb on - strand, within ygcR at 2894.334 kb on - strand, within ygcR at 2894.334 kb on - strand, within ygcR at 2894.362 kb on + strand, within ygcR at 2894.372 kb on + strand, within ygcR at 2894.372 kb on + strand, within ygcR at 2894.373 kb on - strand, within ygcR at 2894.373 kb on - strand, within ygcR at 2894.500 kb on - strand at 2894.638 kb on + strand at 2894.756 kb on + strand, within ygcS at 2894.873 kb on + strand, within ygcS at 2894.873 kb on + strand, within ygcS at 2894.892 kb on + strand, within ygcS at 2894.999 kb on - strand, within ygcS at 2895.130 kb on - strand, within ygcS at 2895.187 kb on + strand, within ygcS at 2895.187 kb on + strand, within ygcS at 2895.442 kb on - strand, within ygcS at 2895.535 kb on - strand, within ygcS at 2895.559 kb on + strand, within ygcS
Per-strain Table
Position Strand Gene LocusTag Fraction GFP_control remove 2,892,854 - -1.3 2,892,888 - +0.1 2,892,888 - +0.8 2,892,914 - -0.4 2,892,914 - +0.1 2,892,914 - -1.6 2,892,939 + +1.4 2,892,973 - -0.5 2,892,993 - +0.7 2,893,003 - +1.0 2,893,184 + ygcQ b2769 0.28 +1.7 2,893,195 - ygcQ b2769 0.30 -0.6 2,893,279 - ygcQ b2769 0.39 -0.3 2,893,284 - ygcQ b2769 0.40 -0.4 2,893,368 - ygcQ b2769 0.50 -2.0 2,893,552 + ygcQ b2769 0.71 +0.1 2,893,566 - ygcQ b2769 0.73 +0.7 2,893,636 - ygcQ b2769 0.81 +1.1 2,893,657 - ygcQ b2769 0.83 -2.1 2,893,717 + +0.6 2,893,825 + +2.2 2,893,825 + +1.4 2,893,883 - ygcR b2770 0.11 -0.6 2,893,891 - ygcR b2770 0.12 +0.3 2,893,896 - ygcR b2770 0.13 +0.9 2,893,959 + ygcR b2770 0.21 +1.1 2,894,040 + ygcR b2770 0.31 +1.0 2,894,040 + ygcR b2770 0.31 +0.4 2,894,141 - ygcR b2770 0.44 +2.3 2,894,260 - ygcR b2770 0.59 +0.6 2,894,334 - ygcR b2770 0.69 +1.5 2,894,334 - ygcR b2770 0.69 +2.2 2,894,362 + ygcR b2770 0.72 -0.9 2,894,372 + ygcR b2770 0.74 +0.1 2,894,372 + ygcR b2770 0.74 +0.7 2,894,373 - ygcR b2770 0.74 +1.2 2,894,373 - ygcR b2770 0.74 +1.3 2,894,500 - -4.8 2,894,638 + -0.2 2,894,756 + ygcS b2771 0.15 -1.1 2,894,873 + ygcS b2771 0.24 +0.6 2,894,873 + ygcS b2771 0.24 +1.4 2,894,892 + ygcS b2771 0.25 -0.6 2,894,999 - ygcS b2771 0.33 +0.3 2,895,130 - ygcS b2771 0.43 +0.6 2,895,187 + ygcS b2771 0.47 -0.1 2,895,187 + ygcS b2771 0.47 +0.8 2,895,442 - ygcS b2771 0.66 +0.3 2,895,535 - ygcS b2771 0.73 +0.2 2,895,559 + ygcS b2771 0.75 +0.1
Or see this region's nucleotide sequence