Strain Fitness in Escherichia coli BW25113 around b1522

Experiment: GFP_control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntuxaB and yneF are separated by 226 nucleotidesyneF and yneG are separated by 111 nucleotidesyneG and yneH overlap by 1 nucleotides b1521: uxaB - tagaturonate reductase (NCBI), at 1,607,253 to 1,608,704 uxaB b1522: yneF - predicted diguanylate cyclase (NCBI), at 1,608,931 to 1,609,878 yneF b1523: yneG - hypothetical protein (NCBI), at 1,609,990 to 1,610,349 yneG b1524: yneH - predicted glutaminase (NCBI), at 1,610,349 to 1,611,275 yneH Position (kb) 1608 1609 1610Strain fitness (log2 ratio) -2 -1 0 1 2at 1607.936 kb on + strand, within uxaBat 1608.074 kb on + strand, within uxaBat 1608.074 kb on + strand, within uxaBat 1608.119 kb on + strand, within uxaBat 1608.272 kb on - strand, within uxaBat 1608.469 kb on - strand, within uxaBat 1608.664 kb on - strandat 1608.962 kb on - strandat 1608.994 kb on + strandat 1609.041 kb on - strand, within yneFat 1609.234 kb on - strand, within yneFat 1609.408 kb on - strand, within yneFat 1609.728 kb on - strand, within yneFat 1609.730 kb on - strand, within yneFat 1609.859 kb on - strandat 1609.946 kb on + strandat 1610.016 kb on + strandat 1610.047 kb on - strand, within yneGat 1610.249 kb on + strand, within yneGat 1610.422 kb on - strandat 1610.543 kb on + strand, within yneH

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction GFP_control
remove
1,607,936 + uxaB b1521 0.47 -1.6
1,608,074 + uxaB b1521 0.57 +0.8
1,608,074 + uxaB b1521 0.57 -2.0
1,608,119 + uxaB b1521 0.60 +1.5
1,608,272 - uxaB b1521 0.70 +0.1
1,608,469 - uxaB b1521 0.84 -0.6
1,608,664 - +1.9
1,608,962 - +0.2
1,608,994 + +0.6
1,609,041 - yneF b1522 0.12 +0.8
1,609,234 - yneF b1522 0.32 +0.2
1,609,408 - yneF b1522 0.50 -0.8
1,609,728 - yneF b1522 0.84 +1.5
1,609,730 - yneF b1522 0.84 +1.2
1,609,859 - +1.0
1,609,946 + +1.1
1,610,016 + -2.0
1,610,047 - yneG b1523 0.16 -0.4
1,610,249 + yneG b1523 0.72 -1.1
1,610,422 - +0.4
1,610,543 + yneH b1524 0.21 +1.9

Or see this region's nucleotide sequence