Strain Fitness in Escherichia coli BW25113 around b1971

Experiment: GFP_control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyedW and yedX are separated by 132 nucleotidesyedX and yedY are separated by 108 nucleotidesyedY and yedZ are separated by 0 nucleotidesyedZ and yodA are separated by 256 nucleotides b1969: yedW - putative 2-component transcriptional regulator (VIMSS), at 2,036,176 to 2,036,847 yedW b1970: yedX - hypothetical protein (NCBI), at 2,036,980 to 2,037,393 yedX b1971: yedY - hypothetical protein (NCBI), at 2,037,502 to 2,038,506 yedY b1972: yedZ - hypothetical protein (NCBI), at 2,038,507 to 2,039,142 yedZ b1973: yodA - conserved metal-binding protein (NCBI), at 2,039,399 to 2,040,049 yodA Position (kb) 2037 2038 2039Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2036.581 kb on - strand, within yedWat 2036.582 kb on + strand, within yedWat 2036.582 kb on + strand, within yedWat 2036.582 kb on + strand, within yedWat 2036.583 kb on - strand, within yedWat 2036.583 kb on - strand, within yedWat 2036.589 kb on - strand, within yedWat 2036.591 kb on - strand, within yedWat 2036.591 kb on - strand, within yedWat 2036.591 kb on - strand, within yedWat 2036.593 kb on + strand, within yedWat 2036.606 kb on - strand, within yedWat 2036.608 kb on - strand, within yedWat 2036.608 kb on - strand, within yedWat 2036.683 kb on - strand, within yedWat 2036.688 kb on + strand, within yedWat 2036.719 kb on - strand, within yedWat 2036.719 kb on - strand, within yedWat 2036.721 kb on - strand, within yedWat 2036.732 kb on + strand, within yedWat 2036.734 kb on + strand, within yedWat 2036.757 kb on + strand, within yedWat 2036.757 kb on + strand, within yedWat 2036.766 kb on + strand, within yedWat 2036.780 kb on + strandat 2036.788 kb on - strandat 2036.790 kb on + strandat 2036.790 kb on + strandat 2036.790 kb on + strandat 2036.791 kb on + strandat 2036.798 kb on - strandat 2036.798 kb on - strandat 2036.801 kb on + strandat 2036.805 kb on + strandat 2036.871 kb on + strandat 2036.913 kb on + strandat 2036.913 kb on + strandat 2036.922 kb on - strandat 2036.927 kb on - strandat 2036.927 kb on - strandat 2036.927 kb on - strandat 2036.934 kb on + strandat 2036.934 kb on + strandat 2036.946 kb on + strandat 2036.970 kb on + strandat 2036.995 kb on + strandat 2036.995 kb on + strandat 2037.001 kb on - strandat 2037.003 kb on - strandat 2037.003 kb on - strandat 2037.009 kb on + strandat 2037.013 kb on - strandat 2037.013 kb on - strandat 2037.052 kb on - strand, within yedXat 2037.060 kb on + strand, within yedXat 2037.102 kb on - strand, within yedXat 2037.102 kb on - strand, within yedXat 2037.112 kb on - strand, within yedXat 2037.118 kb on + strand, within yedXat 2037.150 kb on + strand, within yedXat 2037.150 kb on + strand, within yedXat 2037.150 kb on + strand, within yedXat 2037.198 kb on + strand, within yedXat 2037.207 kb on - strand, within yedXat 2037.212 kb on + strand, within yedXat 2037.312 kb on - strand, within yedXat 2037.332 kb on + strand, within yedXat 2037.335 kb on + strand, within yedXat 2037.389 kb on - strandat 2037.438 kb on - strandat 2037.438 kb on - strandat 2037.448 kb on - strandat 2037.465 kb on + strandat 2037.623 kb on - strand, within yedYat 2037.623 kb on - strand, within yedYat 2037.648 kb on + strand, within yedYat 2037.689 kb on + strand, within yedYat 2037.689 kb on + strand, within yedYat 2037.889 kb on + strand, within yedYat 2037.918 kb on - strand, within yedYat 2037.940 kb on + strand, within yedYat 2038.260 kb on + strand, within yedYat 2038.260 kb on + strand, within yedYat 2038.260 kb on + strand, within yedYat 2038.273 kb on - strand, within yedYat 2038.370 kb on + strand, within yedYat 2038.378 kb on - strand, within yedYat 2038.378 kb on - strand, within yedYat 2038.704 kb on + strand, within yedZat 2038.748 kb on + strand, within yedZat 2038.750 kb on + strand, within yedZat 2038.787 kb on + strand, within yedZat 2038.787 kb on + strand, within yedZat 2038.951 kb on - strand, within yedZat 2038.951 kb on - strand, within yedZat 2038.989 kb on - strand, within yedZat 2039.002 kb on - strand, within yedZat 2039.037 kb on + strand, within yedZat 2039.052 kb on + strand, within yedZat 2039.052 kb on + strand, within yedZat 2039.211 kb on - strandat 2039.216 kb on - strandat 2039.429 kb on + strandat 2039.439 kb on + strandat 2039.439 kb on + strandat 2039.451 kb on + strandat 2039.472 kb on + strand, within yodAat 2039.479 kb on + strand, within yodAat 2039.479 kb on + strand, within yodAat 2039.487 kb on - strand, within yodAat 2039.499 kb on - strand, within yodAat 2039.499 kb on - strand, within yodA

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Per-strain Table

Position Strand Gene LocusTag Fraction GFP_control
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2,036,581 - yedW b1969 0.60 +0.9
2,036,582 + yedW b1969 0.60 -0.7
2,036,582 + yedW b1969 0.60 -2.5
2,036,582 + yedW b1969 0.60 +0.1
2,036,583 - yedW b1969 0.61 -2.7
2,036,583 - yedW b1969 0.61 -1.9
2,036,589 - yedW b1969 0.61 +2.6
2,036,591 - yedW b1969 0.62 +0.1
2,036,591 - yedW b1969 0.62 -0.9
2,036,591 - yedW b1969 0.62 +0.7
2,036,593 + yedW b1969 0.62 +0.2
2,036,606 - yedW b1969 0.64 +0.2
2,036,608 - yedW b1969 0.64 +0.5
2,036,608 - yedW b1969 0.64 -0.1
2,036,683 - yedW b1969 0.75 +1.5
2,036,688 + yedW b1969 0.76 +0.5
2,036,719 - yedW b1969 0.81 -2.8
2,036,719 - yedW b1969 0.81 -2.0
2,036,721 - yedW b1969 0.81 +1.5
2,036,732 + yedW b1969 0.83 +1.5
2,036,734 + yedW b1969 0.83 +0.5
2,036,757 + yedW b1969 0.86 +0.0
2,036,757 + yedW b1969 0.86 +1.8
2,036,766 + yedW b1969 0.88 -2.2
2,036,780 + +1.2
2,036,788 - +1.5
2,036,790 + -2.5
2,036,790 + -2.7
2,036,790 + -1.5
2,036,791 + -0.9
2,036,798 - +1.5
2,036,798 - +1.5
2,036,801 + -0.9
2,036,805 + -0.2
2,036,871 + -1.0
2,036,913 + -1.5
2,036,913 + +2.0
2,036,922 - +0.5
2,036,927 - -2.5
2,036,927 - -0.1
2,036,927 - -3.0
2,036,934 + +1.8
2,036,934 + -0.4
2,036,946 + -0.5
2,036,970 + +2.0
2,036,995 + +1.5
2,036,995 + +0.5
2,037,001 - -3.0
2,037,003 - +1.4
2,037,003 - -2.9
2,037,009 + +1.5
2,037,013 - -1.1
2,037,013 - -4.4
2,037,052 - yedX b1970 0.17 +0.1
2,037,060 + yedX b1970 0.19 -1.4
2,037,102 - yedX b1970 0.29 -0.9
2,037,102 - yedX b1970 0.29 +0.5
2,037,112 - yedX b1970 0.32 -0.1
2,037,118 + yedX b1970 0.33 -0.2
2,037,150 + yedX b1970 0.41 -1.9
2,037,150 + yedX b1970 0.41 -0.7
2,037,150 + yedX b1970 0.41 -2.1
2,037,198 + yedX b1970 0.53 +0.9
2,037,207 - yedX b1970 0.55 +0.5
2,037,212 + yedX b1970 0.56 +1.5
2,037,312 - yedX b1970 0.80 -0.9
2,037,332 + yedX b1970 0.85 -0.5
2,037,335 + yedX b1970 0.86 -0.5
2,037,389 - -1.8
2,037,438 - +2.4
2,037,438 - -0.0
2,037,448 - +1.5
2,037,465 + -0.2
2,037,623 - yedY b1971 0.12 -0.4
2,037,623 - yedY b1971 0.12 -1.4
2,037,648 + yedY b1971 0.15 -3.1
2,037,689 + yedY b1971 0.19 +1.5
2,037,689 + yedY b1971 0.19 -2.8
2,037,889 + yedY b1971 0.39 -0.4
2,037,918 - yedY b1971 0.41 +1.8
2,037,940 + yedY b1971 0.44 -0.5
2,038,260 + yedY b1971 0.75 -2.5
2,038,260 + yedY b1971 0.75 -3.8
2,038,260 + yedY b1971 0.75 -1.4
2,038,273 - yedY b1971 0.77 +0.3
2,038,370 + yedY b1971 0.86 -2.8
2,038,378 - yedY b1971 0.87 -1.0
2,038,378 - yedY b1971 0.87 -1.8
2,038,704 + yedZ b1972 0.31 -0.2
2,038,748 + yedZ b1972 0.38 +0.0
2,038,750 + yedZ b1972 0.38 -0.7
2,038,787 + yedZ b1972 0.44 +0.5
2,038,787 + yedZ b1972 0.44 +0.6
2,038,951 - yedZ b1972 0.70 -1.3
2,038,951 - yedZ b1972 0.70 -0.0
2,038,989 - yedZ b1972 0.76 +0.1
2,039,002 - yedZ b1972 0.78 +0.6
2,039,037 + yedZ b1972 0.83 -0.8
2,039,052 + yedZ b1972 0.86 +0.3
2,039,052 + yedZ b1972 0.86 +0.1
2,039,211 - -0.7
2,039,216 - -0.9
2,039,429 + +0.6
2,039,439 + -0.3
2,039,439 + -3.2
2,039,451 + +0.3
2,039,472 + yodA b1973 0.11 -0.1
2,039,479 + yodA b1973 0.12 -0.9
2,039,479 + yodA b1973 0.12 -0.2
2,039,487 - yodA b1973 0.14 +2.3
2,039,499 - yodA b1973 0.15 -0.7
2,039,499 - yodA b1973 0.15 +0.7

Or see this region's nucleotide sequence