Strain Fitness in Escherichia coli BW25113 around b4256

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,476,061	+	argI	b4254	0.73	+0.1
4,476,061	+	argI	b4254	0.73	+0.1
4,476,069	-	argI	b4254	0.74	-0.5
4,476,069	-	argI	b4254	0.74	-0.2
4,476,104	+	argI	b4254	0.77	+0.1
4,476,104	+	argI	b4254	0.77	+0.2
4,476,142	+	argI	b4254	0.81	+0.5
4,476,165	-	argI	b4254	0.83	-0.5
4,476,272	+				+0.7
4,476,272	+				+0.6
4,476,330	+				+0.1
4,476,339	-				+0.5
4,476,442	+				-0.2
4,476,466	-				-0.5
4,476,585	+	yjgD	b4255	0.21	+1.0
4,476,588	+	yjgD	b4255	0.22	-0.1
4,476,588	+	yjgD	b4255	0.22	+0.7
4,476,588	+	yjgD	b4255	0.22	+0.2
4,476,663	+	yjgD	b4255	0.40	+0.6
4,476,673	-	yjgD	b4255	0.42	+0.2
4,476,680	+	yjgD	b4255	0.44	+0.8
4,476,680	+	yjgD	b4255	0.44	+0.4
4,476,741	-	yjgD	b4255	0.59	-0.4
4,476,822	-	yjgD	b4255	0.78	+0.7
4,476,930	+				+0.1
4,476,969	+				+0.5
4,477,018	+				+0.4
4,477,042	-				-0.0
4,477,072	+				+1.3
4,477,072	+				+1.0
4,477,090	-				+1.1
4,477,090	-				+0.7
4,477,108	-	yjgM	b4256	0.10	+0.9
4,477,108	-	yjgM	b4256	0.10	+1.2
4,477,119	+	yjgM	b4256	0.12	+0.8
4,477,119	+	yjgM	b4256	0.12	+0.9
4,477,130	+	yjgM	b4256	0.14	+1.1
4,477,130	+	yjgM	b4256	0.14	+1.4
4,477,184	+	yjgM	b4256	0.25	+1.1
4,477,192	+	yjgM	b4256	0.27	+1.3
4,477,202	+	yjgM	b4256	0.29	+1.0
4,477,202	-	yjgM	b4256	0.29	+1.2
4,477,213	+	yjgM	b4256	0.31	+3.0
4,477,213	-	yjgM	b4256	0.31	+0.8
4,477,219	+	yjgM	b4256	0.32	+1.2
4,477,310	-	yjgM	b4256	0.50	+1.1
4,477,319	+	yjgM	b4256	0.52	+0.4
4,477,331	+	yjgM	b4256	0.54	+0.9
4,477,339	-	yjgM	b4256	0.56	+1.2
4,477,339	-	yjgM	b4256	0.56	+0.9
4,477,340	+	yjgM	b4256	0.56	+1.3
4,477,348	-	yjgM	b4256	0.58	+0.9
4,477,350	+	yjgM	b4256	0.58	-0.8
4,477,358	-	yjgM	b4256	0.60	+0.7
4,477,358	-	yjgM	b4256	0.60	+0.9
4,477,358	-	yjgM	b4256	0.60	+1.0
4,477,358	-	yjgM	b4256	0.60	+0.7
4,477,363	-	yjgM	b4256	0.61	+0.1
4,477,367	-	yjgM	b4256	0.62	+2.9
4,477,374	+	yjgM	b4256	0.63	+1.3
4,477,378	-	yjgM	b4256	0.64	+1.1
4,477,379	-	yjgM	b4256	0.64	+1.3
4,477,385	-	yjgM	b4256	0.65	+1.0
4,477,400	+	yjgM	b4256	0.68	+1.7
4,477,406	-	yjgM	b4256	0.69	+1.0
4,477,406	-	yjgM	b4256	0.69	+1.6
4,477,408	-	yjgM	b4256	0.70	+1.3
4,477,413	+	yjgM	b4256	0.71	+1.1
4,477,428	+	yjgM	b4256	0.74	+1.6
4,477,428	+	yjgM	b4256	0.74	+1.5
4,477,436	+	yjgM	b4256	0.75	+1.0
4,477,436	+	yjgM	b4256	0.75	+1.0
4,477,441	+	yjgM	b4256	0.76	+0.5
4,477,444	-	yjgM	b4256	0.77	+1.1
4,477,444	-	yjgM	b4256	0.77	+1.4
4,477,444	-	yjgM	b4256	0.77	+0.5
4,477,444	-	yjgM	b4256	0.77	+0.8
4,477,444	-	yjgM	b4256	0.77	+1.2
4,477,476	+	yjgM	b4256	0.83	+1.9
4,477,492	+	yjgM	b4256	0.86	+1.2
4,477,497	+	yjgM	b4256	0.87	+1.3
4,477,498	+	yjgM	b4256	0.88	+0.7
4,477,500	+	yjgM	b4256	0.88	+1.1
4,477,500	+	yjgM	b4256	0.88	+1.6
4,477,505	+	yjgM	b4256	0.89	+1.4
4,477,518	-				+0.6
4,477,521	+				+0.2
4,477,528	+				+1.1
4,477,530	+				+1.7
4,477,556	+				+0.8
4,477,597	+				+1.8
4,477,612	+				+2.3
4,477,612	+				+0.3
4,477,612	+				+0.7
4,477,612	+				+1.5
4,477,615	-				+2.5
4,477,620	-				+0.1
4,477,658	+				-0.9
4,477,658	+				-1.0
4,477,666	-				+0.1
4,477,673	+				-1.9
4,477,673	+				-0.6
4,477,675	+				-2.1
4,477,677	+				-1.4
4,477,693	+				-0.1
4,477,693	+				-0.1
4,477,707	+				+1.7
4,477,709	+				+0.3
4,478,268	+	yjgN	b4257	0.43	+2.7
4,478,530	+	yjgN	b4257	0.65	+2.7