Strain Fitness in Escherichia coli BW25113 around b4388

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,621,946	-	lplA	b4386	0.81	-0.0
4,621,946	-	lplA	b4386	0.81	+0.7
4,621,952	-	lplA	b4386	0.81	-0.2
4,621,957	-	lplA	b4386	0.82	-0.1
4,621,970	+	lplA	b4386	0.83	+0.1
4,621,970	+	lplA	b4386	0.83	-0.1
4,621,976	-	lplA	b4386	0.84	+0.4
4,622,011	-	lplA	b4386	0.87	-1.2
4,622,011	-	lplA	b4386	0.87	+0.0
4,622,126	+				-0.2
4,622,281	-	ytjB	b4387	0.18	-0.5
4,622,281	-	ytjB	b4387	0.18	+0.2
4,622,284	-	ytjB	b4387	0.18	-0.7
4,622,284	-	ytjB	b4387	0.18	-0.2
4,622,289	-	ytjB	b4387	0.19	-0.2
4,622,305	+	ytjB	b4387	0.21	-0.3
4,622,531	+	ytjB	b4387	0.56	-0.1
4,622,534	+	ytjB	b4387	0.57	-0.8
4,622,539	-	ytjB	b4387	0.58	+0.4
4,622,539	-	ytjB	b4387	0.58	-0.5
4,622,637	-	ytjB	b4387	0.73	+1.8
4,622,653	+	ytjB	b4387	0.75	+1.9
4,622,705	-	ytjB	b4387	0.83	-0.5
4,622,816	-				-0.7
4,622,846	+				-0.9
4,622,901	+				-1.9
4,622,901	+				-1.0
4,622,925	+				-1.8
4,622,925	+				-1.0
4,622,925	+				-4.7
4,622,944	+				+0.3
4,622,952	-				-4.0
4,622,952	-				-4.3
4,622,977	-				-5.1
4,623,023	+	serB	b4388	0.11	-2.7
4,623,023	-	serB	b4388	0.11	-4.2
4,623,038	+	serB	b4388	0.12	-4.8
4,623,038	+	serB	b4388	0.12	-3.8
4,623,048	+	serB	b4388	0.13	-3.6
4,623,048	+	serB	b4388	0.13	-3.8
4,623,056	-	serB	b4388	0.14	-5.7
4,623,109	-	serB	b4388	0.20	-4.0
4,623,126	-	serB	b4388	0.21	-3.9
4,623,126	-	serB	b4388	0.21	-4.3
4,623,202	+	serB	b4388	0.29	-6.2
4,623,296	+	serB	b4388	0.39	-5.0
4,623,352	-	serB	b4388	0.45	-3.0
4,623,352	-	serB	b4388	0.45	-2.1
4,623,551	+	serB	b4388	0.65	-5.4
4,623,691	+	serB	b4388	0.80	-4.1
4,623,691	+	serB	b4388	0.80	-4.7
4,623,746	-	serB	b4388	0.85	-3.8
4,623,832	+				-4.0
4,623,832	+				-3.3
4,623,860	+				-4.8
4,623,895	+				-0.7
4,623,895	+				-0.8
4,623,910	-				-0.1
4,623,925	-				-0.2
4,623,925	-				+0.2
4,623,933	-				+0.2
4,624,047	+				+0.4
4,624,047	+				+0.0
4,624,050	+				-0.4
4,624,104	-	radA	b4389	0.12	+0.4
4,624,104	-	radA	b4389	0.12	+0.5
4,624,121	+	radA	b4389	0.13	-0.5
4,624,173	+	radA	b4389	0.17	+0.3
4,624,173	+	radA	b4389	0.17	-0.3
4,624,173	+	radA	b4389	0.17	-0.6
4,624,181	-	radA	b4389	0.18	+0.3
4,624,181	-	radA	b4389	0.18	+0.4
4,624,211	+	radA	b4389	0.20	-0.9
4,624,219	-	radA	b4389	0.21	+0.5
4,624,334	+	radA	b4389	0.29	-0.4
4,624,405	-	radA	b4389	0.34	+1.1
4,624,405	-	radA	b4389	0.34	+0.3
4,624,422	+	radA	b4389	0.35	+0.3
4,624,490	+	radA	b4389	0.40	-0.3
4,624,490	+	radA	b4389	0.40	-0.1
4,624,498	-	radA	b4389	0.41	+0.4
4,624,532	-	radA	b4389	0.43	-0.3
4,624,569	+	radA	b4389	0.46	-0.3
4,624,620	+	radA	b4389	0.50	-0.2
4,624,648	-	radA	b4389	0.52	+0.5
4,624,755	+	radA	b4389	0.59	+1.3
4,624,755	+	radA	b4389	0.59	-1.6
4,624,826	+	radA	b4389	0.64	+0.3
4,624,826	+	radA	b4389	0.64	+0.6
4,624,827	+	radA	b4389	0.64	+0.2
4,624,832	+	radA	b4389	0.65	+1.0
4,624,855	-	radA	b4389	0.67	-0.4
4,624,864	+	radA	b4389	0.67	-0.4