Strain Fitness in Escherichia coli BW25113 around b4322

Experiment: Ying_Nucleobase14 rep C; time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 3
4,548,745	+	gntP	b4321	0.57	+0.5
4,548,783	+	gntP	b4321	0.60	-0.3
4,548,836	-	gntP	b4321	0.64	+0.0
4,548,836	-	gntP	b4321	0.64	-0.4
4,548,865	+	gntP	b4321	0.66	-0.1
4,548,952	-	gntP	b4321	0.73	-0.2
4,548,981	-	gntP	b4321	0.75	-0.4
4,549,016	+	gntP	b4321	0.77	+0.5
4,549,016	+	gntP	b4321	0.77	-1.0
4,549,024	-	gntP	b4321	0.78	+0.1
4,549,024	-	gntP	b4321	0.78	+0.0
4,549,024	-	gntP	b4321	0.78	+0.3
4,549,024	-	gntP	b4321	0.78	+0.4
4,549,027	-	gntP	b4321	0.78	-0.4
4,549,027	-	gntP	b4321	0.78	-0.5
4,549,029	-	gntP	b4321	0.78	+0.7
4,549,167	+	gntP	b4321	0.89	+0.2
4,549,173	-	gntP	b4321	0.89	-0.6
4,549,175	-	gntP	b4321	0.89	+0.6
4,549,197	-				+0.0
4,549,204	-				-0.2
4,549,265	+				+0.3
4,549,265	+				-0.1
4,549,335	-				+1.0
4,549,335	-				-0.1
4,549,416	-				-0.7
4,549,426	+				-0.7
4,549,456	+				-0.8
4,549,456	+				-0.3
4,549,534	+				-0.4
4,549,534	-				-0.0
4,549,544	+				-0.2
4,549,596	-				-0.1
4,549,596	-				-0.5
4,549,602	-				+0.3
4,549,611	-				-0.7
4,549,618	+				-0.3
4,549,643	-				-0.3
4,549,686	-				-0.8
4,549,759	-				-0.3
4,549,776	-				+0.6
4,549,834	+	uxuA	b4322	0.15	+0.3
4,549,834	+	uxuA	b4322	0.15	+0.1
4,549,835	+	uxuA	b4322	0.15	-0.1
4,549,835	+	uxuA	b4322	0.15	+0.2
4,549,839	+	uxuA	b4322	0.15	+0.3
4,549,839	+	uxuA	b4322	0.15	-0.1
4,549,847	-	uxuA	b4322	0.16	-0.7
4,549,935	+	uxuA	b4322	0.23	-0.0
4,549,990	+	uxuA	b4322	0.28	+0.7
4,550,024	+	uxuA	b4322	0.31	-0.4
4,550,153	-	uxuA	b4322	0.42	-0.0
4,550,185	-	uxuA	b4322	0.44	+0.3
4,550,253	-	uxuA	b4322	0.50	-0.4
4,550,253	-	uxuA	b4322	0.50	+0.2
4,550,255	+	uxuA	b4322	0.50	-0.1
4,550,263	-	uxuA	b4322	0.51	+0.8
4,550,407	+	uxuA	b4322	0.63	-0.3
4,550,409	+	uxuA	b4322	0.63	-0.7
4,550,423	+	uxuA	b4322	0.64	+0.3
4,550,444	-	uxuA	b4322	0.66	-2.0
4,550,444	-	uxuA	b4322	0.66	+0.5
4,550,458	+	uxuA	b4322	0.67	-0.3
4,550,507	+	uxuA	b4322	0.72	-0.1
4,550,563	-	uxuA	b4322	0.76	-0.8
4,550,563	-	uxuA	b4322	0.76	+1.8
4,550,703	+	uxuA	b4322	0.88	-0.1
4,550,712	-	uxuA	b4322	0.89	+0.1
4,550,712	-	uxuA	b4322	0.89	+0.1
4,550,750	-				+0.5
4,550,750	-				-0.0
4,550,829	+				-0.3
4,550,928	+				-0.3
4,550,999	+				-0.1
4,551,012	-				-0.6
4,551,051	-				+0.3
4,551,051	-				+0.3
4,551,051	-				+2.2
4,551,064	-				+1.7
4,551,064	-				+0.6
4,551,154	+	uxuB	b4323	0.16	-0.3
4,551,154	+	uxuB	b4323	0.16	+0.5
4,551,160	-	uxuB	b4323	0.16	-7.5
4,551,196	+	uxuB	b4323	0.19	+0.5
4,551,196	+	uxuB	b4323	0.19	+0.3
4,551,254	+	uxuB	b4323	0.23	+0.0
4,551,589	+	uxuB	b4323	0.46	-1.1
4,551,657	+	uxuB	b4323	0.50	-0.9
4,551,657	+	uxuB	b4323	0.50	+0.1
4,551,678	-	uxuB	b4323	0.52	-0.3
4,551,680	-	uxuB	b4323	0.52	+0.4
4,551,708	-	uxuB	b4323	0.54	+0.1
4,551,749	-	uxuB	b4323	0.56	-0.3
4,551,760	+	uxuB	b4323	0.57	+0.6
4,551,760	+	uxuB	b4323	0.57	-0.0
4,551,765	+	uxuB	b4323	0.58	-0.0
4,551,771	+	uxuB	b4323	0.58	-1.2
4,551,824	+	uxuB	b4323	0.62	-0.4